Author Archives: sarrah putwa

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New Device Could Help Understand Evolution

Are we closer to overcoming genetic mutations? A recently published paper in Science journal describes a device invented to study the effects of genetic mutations in individual bacterial cells.

The researchers found only one percent of the mutations resulted in cell death, whereas most of non-lethal mutations seemed to have no effect.

Genetic mutations fuel evolution, but they can be detrimental to humans. They are responsible for a range of problems plaguing humanity, like antibacterial resistance to cancer.  Determining the rates at which mutations occur is central to understanding genetic mutations.

Although gene mutation in bacteria have been studied for ages, they have been on large population of bacteria. These tests start by using millions of bacteria which replicate over many days, then the final colony is compared to the starting colony to find the rate of mutations over generations of bacteria.

Bacterial Cells Image courtesy – wikipedia

The problems with this approach is that you can only analyze a small number of samples, and the effects of mutations are an average seen in all the cells. Most lethal mutations are never seen, since those bacterial cells die before replicating to form a colony.

Researchers from institutes across France built a device called a “mother machine” to separate an individual bacterium, observe it replicate, and study its mutations over several generation.

This device was installed with hundreds of tiny tubes that could trap a single bacterial cell at a time. The cell division process was observed with  a microscope and if there was a mistake in genetic replication, it was labelled with a fluorescent tag – a molecule attached to a  biomolecule to track its activity.

The researchers found that all cells had the same likelihood of mutating. One cell was not more inclined to mutate than another cell.

The researchers watched 200 generations of bacteria that  had total of 20, 000 mutations.

Summary of the Effects of Mutation on Bacterial Cells   

Number of mutations observed Percent of all mutations (%)
Lethal mutations (caused cell death) 200 1
Harmful mutations (didn’t cause cell death) 40 0.2
Harmless mutations 19, 760 98.8
Total mutations observed 20, 000 100

Data source- Robert et al., Science (2018)

Only one percent  of the mutations were lethal to the cell, 0.2%  were harmful but did not kill  the cell. The rest of the time, the mutation does not affect the cell.

The bacterial cells were living in controlled environments conducive to cell growth. This means the cells were not exposed to environmental factors  that would result in natural selection. As a result, the researchers couldn’t determine if any of the harmless mutations were beneficial for bacteria’s survival in natural environments.

The researchers are planning to see the effects of surroundings on mutation by carrying out the experiments while changing the environment around the bacteria.

However, a controlled setting without natural selection reveals the rate of mutation inherent to cell replication, which can help scientists understand what drives mutation.

References:

Robert, L.; Ollion, J.; Robert, J.; Song, X.; Matic, I.; Elez, M. Science2018, 359(6381), 1283–1286.

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Why Biofuels Can’t Replace Transportation Fuels

Agitation regarding rising greenhouse emissions and petroleum costs has drawn focus to biofuels as renewable source of transportation fuel. However, a study published in Angewandte Chemie  argued that crops should not be harvested for biofuel due to their reduced photosynthetic efficiency (percent light converted to stored energy) and annexation of agricultural land from food plants.  

Biofuels require a massive energy input espoused as transportation costs, fertilizer production and agriculture machinery that amounts to 50% of the energy that biofuels contain. The energy investment is extricated from fossil fuels, leading scientists to believe that the net reduction in carbon dioxide emissions from biofuel production is marginal.

Moreover, repurposing arable land for fuel crop harvest will decrease food production thereby inflaming food prices.

Alternative renewable energy such as photovoltaic cells, which are used to generate solar power, are 150 times more efficient at harnessing energy than plants. Moreover, combustion engines powered by biofuels have 20% thermal efficiency compared to electrical engines, which utilize 80% stored chemical energy in batteries.

Hence, harnessing solar generated electricity to charge electric cars is found to optimize land usage 600 times more efficiently than producing biofuels to power internal combustion engines.

The Biofuel Lifecycle Credit source: Wikipedia

Biomass differs from other renewable sources since its energy is stored as chemical bonds in carbohydrates that are broken down to ethanol to power cars.  

Photosynthetic pigments in plants absorb light, and electrons and protons (negatively and positively charged particles) transfer the radiant energy to reactor centres. Subsequent reactions synthesize ATP,  a biological energy carrier, which assimilates carbon dioxide from the air and converts it to carbohydrate.

As a result of biological inefficacies in electron movement, limited reaction rates, and maximal sunlight absorption of 20% by photosynthetic pigments, only 1% photosynthetic efficiency is observed for most plants. Using the yield of biofuel per unit area of land, the photosynthetic efficiency was calculated for various fuel crops.

Photosynthetic Efficiency for Different Fuel Crops Data Source- Sustainable Energy – without the hot air

Given that biomass is a source of carbon, researchers believe that biomass is best utilized for manufacturing chemicals that are synthesized from petroleum. Leftover plant residues and compost can be used for generating heat and electricity.

Planting trees would fix 2.7 kg of carbon dioxide per square meter,whereas biofeuls with 1% photosynthetic efficiency would produce 0.31 kg of carbon dioxide per square meter when combusted.

Sarrah Putwa

References

Vennestrøm, P. N. R., Osmundsen, C. M., Christensen, C. H. and Taarning, E. (2011), Beyond Petrochemicals: The Renewable Chemicals Industry. Angew. Chem. Int. Ed., 50: 10502–10509. doi:10.1002/anie.201102117

David Mackay. Sustainable Energy – without the hot air http://www.withouthotair.com/c6/page_43.shtml (accessed Feb 28, 2018).

Michel, H. (2012), Editorial: The Nonsense of Biofuels. Angew. Chem. Int. Ed., 51: 2516–2518. doi:10.1002/anie.201200218

 

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CRUCIAL PLANT NUTRIENT RUNNING OUT : PHOSPHOROUS

Are we at the risk of global starvation? Scientists at the Global Phosphorus Research Initiative predict that in 30-40 years, there won’t be enough mined phosphorus to feed the planet.  

Nations around the world have committed to ensuring food security in alignment with UN Sustainable Development and Millennium Development goals. Exponential population growth, evolution of societal food habits, disproportionate fertilizer usage and absence of phosphorous recycling practices from organic waste has diminished our supply and put us at risk of a global food scarcity. 

Phosphorus Rock Remaining                                  Image Credits: Phosphorus Futures

From the composition of your DNA and bones to plant biomass, this overlooked element is a vital ingredient for survival of organisms. 

Phosphorous based fertilizers sparked the “Green Revolution”, which improved crop yields to feed the 4.2 billion population rise since 1950. The global demand for phosphorus is forecasted to rise by 50-100%. 

Alterations in food habits such as increased preference of dairy and meat-based diets over plant material, has put a strain on phosphorus demands. Studies show that livestock requires double the phosphorus for plant fecundation.

Historically, phosphorus enriched human detritus, decaying plant matter and manure was an  added stimulant for crop yields. Urbanization and innovation of household flush toilets meant human excreta was now disposed in water bodies and waste facilities.

Distribution of World Phosphorous Image credits : Phosphorous Futures

Currently,  the dominant reserves of phosphorous are exclusive to US, China, Morocco, Jordan and South Africa, leaving the mineral trade subject to international and geopolitical influences.

China has levied 135% duty on its phosphorus exports to secure its own domestic supply of the mineral. Morocco is subject to sanctions due to its transgressions of human rights. USA’s primary reserves in California are projected to dry up in approximately 30 years, whereas western European nations and India are utterly devoid of the element, forcing all three regions to heavily rely on imports.

An integrated global effort is imperative to resolve the phosphate scarcity.

Urbanization has birthed population dense cities brimming with phosphorus hotbeds since humans excrete nearly 100% of the phosphorus they consume, yet, only 10% of the waste is recirculated for fecundation. Government initiatives are in motion in European countries and China to extract the mineral from sewage treatment facilities. 

Furthermore, only 50% of phosphorous produced by animal waste and 40% of food residues is agriculturally recirculated. There is increasing movement to minimize phosphorus losses by recycling  plant and animal byproducts for soil nourishment.

Societal changes in food habits, such as ingesting more plant intensive diets and diminishing food wastage, are crucial in avoiding the impending calamity of food insecurity.

Video attributes: https://www.youtube.com/watch?v=Y17HqUsaoj8

References

Elser, J; White, S. Peak Phosphorus, and Why It Matters. Foreign Policy. 2010 

Cordell, D.; Drangert, J.-O.; White, S. Global Environmental Change 2009, 19 (2), 292–305.