Category Archives: Biological Sciences

HIV Can’t Hide From Math

Despite the amazing advancements of modern medicine, detecting early stages of Human Immunodeficiency Virus (HIV) is still proving difficult.

Source: https://commons.wikimedia.org/wiki/File:Anti-hiv-medications

At the end of 2014, almost 76,000 Canadians had been diagnosed with HIV, up by almost 10% since 2011. Even more alarming is that 21% of the infected individuals weren’t even aware they had HIV. These numbers are an illustration of the medical industry’s struggle with understanding HIV.

While many researchers have studied HIV from a biological perspective, Dr. Daniel Coombs and a team of biological mathematicians at the University of British Columbia took on the issue from a different angle—by using math.

“We took a modelling approach because we couldn’t think of how you could study this experimentally”
– Dr. Daniel Coombs

According to Dr. Coombs, the study of HIV is crucial to our society, stating that “the reason people work on HIV in such detail is because it’s not curable.” Commonly, we would associate the study of infection and disease with biological research, however, there are times when the answers we need simply cannot be provided by a pure biologist. For example, scientists understand that after exposure to HIV, there is a period of time where no HIV tests can detect this infection (known as ‘eclipse period’); however, what biological scientists haven’t been able to confidently determine is the exact length of this eclipse period. That’s where Dr. Coombs and his team come in. They are using mathematical modelling in an attempt to calculate this.

https://www.youtube.com/watch?v=rnHEcUyrazk&feature=youtu.be

The length of this eclipse period is shown to be quite variable, but lasts an average of about 8-10 days. However, according to Coombs’ research, the chance of obtaining a false negative HIV test (test says there’s no infection, but there actually is) is still 5% at three weeks after exposure. In some cases, if the infection is tested too early, a false negative could be obtained and falsely convince a patient that they do not have HIV. This could lead to the patient ignoring the virus, and the virus secretly progressing without any treatment to combat it.

Source: http://www.freestockphotos.biz/stockphoto/17099

To avoid such a dangerous situation, those who believe they have been exposed to HIV should know what measures to take when getting tested. We explore the importance of proper HIV testing, along with insights from Dr. Coombs:

The quest to understand HIV has been difficult and unending, but Dr. Coombs and his research team have shown us how useful of a tool math can be. By providing us with one more piece to the puzzle, the eclipse period length, Coombs and his team have provided valuable insight into proper HIV patient care and HIV testing. Just like Dr. Coombs says, “there’s so much we don’t know and I think there’s so many places where mathematics can come in and make an impact on biology.”

Written by: Silvana Jakupovic, Grace Tang, Howard Bai, and Patrick Geeraert

Tooth Replacement Patterns in Leopard Geckos

Source: Dr. Theresa Grieco, UBC

As the most important component of eating, teeth are organs that are vital to a wide variety of species, including mammals, reptiles, and insects. Odontogenesis, which is the process of tooth replacement, is something that occurs in humans only once in a lifetime, yet this process varies between organisms. Reptiles, specifically geckos, shed and replace their teeth once a month, which is something that is not commonly known by the general public. It is this characteristic of a gecko that make them the ideal research animal for studying tooth replacement.  The leopard gecko, and its unique features, are discussed in the podcast below, with the help of researcher Dr. Theresa Grieco.

University of British Columbia’s Dr. Theresa Grieco conducted a research study  on odontogensis in leopard geckos, a relatively uncommon study animal. From the study, the main finding was that odontogensis is a process that is predetermined in the embryo, and continues naturally in an adult. The video below describes Dr. Grieco’s study, and its applications to the research community.

Dr. Grieco’s study has contributed a significant amount of information to the field of odontogenesis. The results of this study, which have laid down a foundation for future research, will eventually have valuable interpretations in humans.

In terms of future research, Dr. Grieco plans to perform surgeries that have yet to be  done by researchers, as there are many unanswered questions surrounding tooth replacement. As stated by Dr. Grieco, what the tooth replacement “cycle is actually made up of is still what we are trying to figure out.” From this, researchers can determine the importance that each step holds in the cycle of odontogenesis in geckos.

Source: Dr. Theresa Grieco, UBC

However, more importantly, this research has the potential to enhance understanding of human tooth, and organ regeneration. As mentioned in the study, “there is going to be a bridge at some point” between the findings on geckos, and human teeth. Specifically, Dr. Grieco states that her study serves as a basis to determine whether morphological clues and common tooth patterns (similar to those found in geckos) will be found in humans, and if these can be used to discover a way for humans to re-grow their teeth too.

This aspect of science research is minor, but has many implications and benefits, and as Dr. Grieco states, “I don’t think I’m learning everything about life, but I’m definitely helping.”

Why Should We Start to Drink Green Tea?

Health issues are a topic that everybody is interested in. People find healthy foods because they have irregular eating habits and living habits. Organic foods, vegetables, less meat consumptions, fresh fruits, supplements like vitamin D are major substances that most people are pursuing.

Amongst those various health-related foods, one of the most I love to have is green tea because of its huge benefits other than anything.

source: nokchawon

Green tea is the most well-known and popular beverage in the world. Even people living in non- tea culture conturies enjoy green tea for its health benefits.  The origin of green tea started in China and it is widely accepted that the first green tea appeared in history was in 2723 BC. Then green tea spread to East Asia and Britain, and then to the rest of the world.

source: teasenz

Then why is green tea so loved? What makes it so beneficial to our health?

Green tea has a variety of antioxidants and nutrients. Catechin and caffeine are well-known among them. These antioxidants and nutrients work in multiple beneficial ways in our body.

Here are few benefits of drinking green tea

 

1) Protect the heart health:

Having green tea prevent many risk factors for heart disease such as stroke, lowering blood pressure, and reducing cholesterol levels. Even after suffering from heart disease, green tea helps the recovery of heart cells.

2) Protect vision:

One of major nutrients in green tea is called catechins; a type of antioxidants. Because catechins are strong antioxidatns, they help to protect the eyes  from oxidation stress and also vision loss. Therefore, it would benefit to people who are surrounded by electronic devices.

3) Improve bone health:

Because bone is a living tisuue, it has certain balance between formation and resorption. As humans get old, this balance gets weaker too. Regular consumption of green tea helps to increase bone formation (mineralization) and weaken the cells that resorb it, so the balance of formation and resorption is maintained in normal.

4) Improve brain function:

Regular consumption of green tea every day could help to improve memory. According to the reseach done by University of Newcastle, green tea inhibits certain enzymes in the brain which cause memory loss. In addition, it is shown that green tea is also effective to prevent Alzheimer’s disease. Green tea inhibits the enzyme in the brain which breaks down neurotransmitter (it transmits signals across brain nerve cells).

5) Prevent cancers:

According to the research in the Nature, regular consumption of green tea help preven cancers in humans by inhibition of enzyme that causes growth of cancers; typically stomach, breast, and prostate cancer.

 

source: ochaandco

Too much dosage of any foods or drinks always induce troubles as well as green tea. However, moderate intake of green tea regularly will change our lifestyle and health in highly beneficial ways. This is not hassle as much as visiting physicians and not hard as much as doing exercise everyday. This simple living habits can greatly change our health.

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Gaming to Greater Cognition

“Stop playing those video games Aaron, they will rot your brain. Starring at that screen that much is going to damage your eyes.” My mother, just as many others, believed that video games were entirely useless and detrimental to a developing child’s mind. I have been a gamer for all of my memorable life. Pretty most people I meet, who are not at least minor gamers themselves, find video games to be a waste of time and pointless. With over 155 million Americans gaming regularly, and gaming trends increasing in countries all over the world, research into the effects of gaming have become a popular study.

Source: gamesdailynews

Video games have advanced significantly in the past 20 years. There are so many different types of games with varying complexities, publishers, and gameplay. One of the most popular genres of games is action video games which include popular examples such as Call of Duty, Grand Theft Auto, Battlefield, Halo, and many more. Most of these action video games are ones that many concerned parents believe promote violent behavior. This notion that action or violent video games promote violent behavior has been disproven by many studies. These video games do have an effect on people, just not in the negative way that many people believe.

Researchers such as Matthew Dye, Shawn Green, and Daphne Bavelier wanted to examine the effects that action video games had on human cognition. Their study examined how action video games influence perceptual processing. They found that (action) video games provided an efficient training regimen that increased the speed of perceptual reactions in participants without decreasing accuracy. Not only does gaming seem to increase perceptual processing, but a meta-analysis of action video games found that they can also enhance top-down attention and spatial cognition. It was also found that regular gamers had superior multitasking abilities than the average person, even those that claimed to be excellent multitaskers.

It is amazing to know that I have been working hard to improving my cognition and not just wasting my time playing video games. A month after Call of Duty: Balck Op’s release the game had been played the equivalent of 68,000 years worldwide. That amount of time is shocking, and its even more shocking to think what a game designed specifically to increase cognitive function could achieve. Although not all games are created equal in their ability to positively influences cognition, researchers have begun to try to isolate what aspects of these video games are resulting in these positive effects. Daphne Bavelier hopes that by teaming up with entertainment-media experts, researchers can try and find a way to use video games to better understand the brain functions utilized during gameplay. Then, researchers can use that knowledge to provide new and more engaging games that can be used to train and rehabilitate cognitive functions in children, adults, and patients. This positive effect that video games have, and how it could be utilized in the future is explained by Daphne Bavelier in the TED Talk included below.

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By Aaron Reiss

An Unlikely Hero

Conservation has entered the spotlight in recent years, but there is one resource shortage no amount of recycling can help: human organs. Every day 2o people die waiting for an organ transplant and this problem is only getting worse. From 1991 to 2015, the number of people on the transplant list in the US has risen by nearly 100, 000, while the number of donors has risen by less than 10, 000. This problem is exasperated as only 3 out of every 1000 deaths leave organs viable for transplant. Luckily Biologist Luhan Yang may have a solution with an unlikely face.

Source: Google

Yang literally hopes to bioengineer pigs into human organ farms. Yes, organ farms. Although it sounds crazy, xenotransplantation, the transplant of animal tissues/organs into people, is not a new concept. Pig and cow heart valves have been transplanted into humans as an alternative to mechanical valves for almost 50 years. But implanting a functional organ is very different than implanting a simple valve. 

Source: Flickr Commons

Pig and cow heart valves are treated with a variety of chemicals to preserve the tissue and prevent it from rejection by the immune system. Since the tissue is only preserved, it is not technically alive, which obviously would not work with an organ. To be of any use, an organ must be alive and fully connected to the rest of the body, which understandably presents some major problems.

The first problem is organ rejection. Everyone’s cells have protein “markers” displayed on their surface completely unique to the individual. Your immune system uses these to distinguish between what’s you and what isn’t, so it doesn’t accidentally attack itself. That’s why patients’ blood types AND protein types must match for a transplant to be successful. Even then, the recipient must spend the rest of their life taking anti-rejection medications. Even organs from close family members often don’t match well enough to risk the operation, so transplanting from an entirely different species is undoubtedly more difficult.

Source: Flickr Commons

The second problem is the potential spread of viruses. Pig and human anatomies share certain similarities, which makes them ideal to grow organs. But this means many of their diseases can also infect us, like the H1N1 swine flu outbreak in 2009. Specifically, the type of virus of concern is called an “endogenous retrovirus”. Retroviruses are a special type of virus able to open up an infected host’s DNA, and insert its own before repairing it. This means the virus is literally part of the pig’s genome, and therefore is exceptionally difficult to remove.

Source: Flickr Commons

This is where Yang comes in. She hopes to solve these issues by genetically modifying pigs using CRISPR/Cas9 technology. CRISPR is a revolutionary gene editing technique that  allows scientists to open organisms’ DNA up at specific locations to add or remove segments. In 2015, Yang’s team made history by successfully developing a method to remove 62 retroviruses from pig cells at once. It was the largest number of modifications ever done to a mammalian genome in one procedure. Then last year, her team produced 15 live piglets without any harmful retroviruses. Their next goal is to take CRISPR even further to produce what they call “Pig 2.0”. They hope to further modify pig’s DNA to make their organs more human-like, solving the problem of organ rejection.

The truth behind people who only need a little sleep

Have you ever felt that 24 hours a day is not enough? The first time I went to the university, a senior student said that “you can only chose two among study, sleep, and social life”. Well, I am willing to sleep only 4 hours a day as long as I can get all As on my grade report and be a social star. However, the truth is that I am pathetic sleep-alcoholics!

Sweet baby sleep in the bed http://maxpixel.freegreatpicture.com/Girl-Toddler-Sleep-Child-Portrait-Sweet-Baby-1151351

Enough sleep is essential to everyone since it ensures that our brain functions well. Human brain is like a network of many functional regions. When people are sleeping, this network will coordinate each brain region and deal with a load of information we take in at the daytime. Sleep loss will disrupt this coordinated activities and the damage of this network is associated with bad memory, Alzheimer’s disease and many other consequences.

Here is a Ted-talk video explained the negative consequences of sleep deprivation.

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However, there is no doubt that many successful people in the world only need a little sleep to keep creative and productive during the work. Jack Dorsey, the founder of Twitter, sleeps 4-6 hours a day; Apple CEO Tim Cook starts work at 4:30 A.M.; Yahoo CEO Marissa Mayer reduced sleep time by sleep under her desk. How can these people success living with such a little sleep? Is it because of their talented genes? A study found the answer.

Researchers from the University of Utah have studied 800 people who claimed that they don’t need full-time sleep(i.e. 7-9 hours sleep). Researchers monitored the participants’ brain activities at daytime. They found that short sleepers have increased motions of amygdala — a region in brain that manages emotion and sensation. This implied that short sleepers pushed themselves to keep awake by engaging into busy works. Even though some people claimed that they function well during the day, but to some extent their brain works like drunk.

Finally, the lack of sleep results in the same negative effect on everyone. If you wonder why some people can sleep 4 hours and still keep up enthusiasm but you can’t, the only difference is that successful businessmen/women have a stronger motivation and push themselves live in an intense living pattern. However, health is also very important and chronic sleep deprivation may lead to irreversible damages. It is like a race between health and ambition, nobody knows who will touch the line at the first.