A new and natural pathway to nitric oxide!

Nitric oxide (NO) is one of the most widely-produced gases in the human body, and has been shown to play a major role in the function of the cardiovascular, nervous, and immune systems. This means that it has implications in the treatment and management of many conditions such as erectile dysfunction, muscle soreness, and Type II diabetes. Despite the numerous processes in which nitric oxide play a role, there are only two known routes of production in living organisms. 

Research jointly published by the Institute of Pharmaceutical Biotechnology at the Zhejiang University School of Medicine in Hangzhou, China and the Department of Chemistry at the University of British Columbia examined one alternative method to the production of nitric oxide. In this pathway, two enzymes are used to generate a chemical compound known as streptozocin that creates NO as a byproduct.

Simplified schematic of the two reactions that occur to produce the N-nitroso compound streptozocin and nitric oxide (NO) as products

This work provides support to the idea that there may be alternative routes to the synthesis of this critically important compound. We spoke to Alyssa Henderson about her work on the project, her experience with research in general, and some of the challenges she faced while working on this publication.

Streptozocin is part of a larger class of N-nitroso compounds, which are identified by the presence of an -N-N=O group in its structure. Alyssa’s research was motivated by the natural presence of N-nitroso compounds in natural products. It was proposed that these compounds, and the biological pathway of its production, could be significant in the production of NO.

Tests were done with a solution containing components of E. coli and stzE (one of the enzymes isolated from the genome of streptozocin), and it was found that stzE is necessary to produce the compounds involved in the second step of the process. 

The next step in this two-enzyme pathway was similarly isolated from the streptozocin genome, and was found to be necessary for the production of the products shown below. Alyssa’s research suggested that nitric oxide is produced in the conversion of compound 3 to compounds 4 and 5, which is catalyzed by stzF.

Structure of the products generated from the second step of the two-enzyme pathway.

In order to explore how widely distributed these genes are, Alyssa’s team found 40 enzyme pairs with similar functions to the stzE/stzF enzyme pair in a variety of soil-dwelling and plant-associated bacteria, which further supports the idea that natural routes to nitric oxide synthesis exist. 

Cell cultures of some of the soil-dwelling bacteria found to have similar enzyme functions to the stzE/stzF pairs

The significance of enzymes in these soil microbes is discussed in the podcast below:

While this paper doesn’t fully explain all of the possible processes that may be involved in the natural production of nitric oxide in the environment, it sets the stage for important advancements in the field.

A Gene that can Save our Crops from Droughts

Drought. Source: Flickr

Costing around 80 billion dollars per year, droughts are one of the most expensive natural disasters in the world due to its negative impacts on agriculture. Additionally, because droughts are unavoidable, it is important for researchers to study the protective surfaces of crops, as it provides a better sense of how to prevent and minimize the devastating effects of droughts on global agriculture.

A study done by Dr. Reinhard Jetter and other researchers from the University of British Columbia, as well as researchers from the Northwest A&F University in China, focussed on this topic of protective plant surfaces, more specifically, the wax surfaces of wheat crops.

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To gain insight on the genomic mechanisms involved in wax synthesis, researchers gathered and experimented on Chinese wheat crops. In particular, the team wanted to determine the gene involved in wax synthesis. Therefore, they placed the wheat crops under stressful drought conditions, so that the crops would overproduce wax. This overproduction allowed for researchers to isolate and study the gene permitting this wax production.

Wheat. Source: Flickr

Through this study, Dr. Jetter and his colleagues confirmed that the TaCER1-1A gene was involved in wax production. TaCER1-1A is a protein, made by the TaCER1-1A gene, that was found to be located in the endoplasmic reticulum of the cell, an important compartment for wax synthesis. Thus, its location and the use of a variety of techniques, one being the production of multiple copies of this gene, were used in order to further study how wax synthesis occurs. From this, the researchers were able to verify that the TaCER1-1A gene was indeed involved in wax synthesis.

The information obtained from this study can help provide insight about the production of wax on crops. These results are particularly important for farmers, as this may aid them in maximizing their crop yield, by making the crops more drought resistant. Therefore, to improve the crop yield, crops can either be genetically modified (GMOs) or undergo selective breeding. Genetically modifying the crops directly alters the genetic material of the crops through genetic engineering in a laboratory. Both selective breeding and GMOs have their own advantages and disadvantages. To learn more about them, listen to the podcast below.

With global warming on the rise, droughts are occurring more than ever before. Therefore, in regards to agriculture, there needs to be an implementation of crops that are able to survive and grow under these stressful conditions without sacrificing one important mechanism to improve another. From the study done by Dr. Jetter and his colleagues, we now know that the specific gene, TaCER1-1A, is one that responds to abiotic stresses such as droughts by producing more wax. Therefore, through improving our understanding of plant mechanisms, how specific genes affect a plant, and how a plant responds to stresses naturally, we can find a pathway to help our crops thrive.

– Anum Khan, Karina To, Sharon Li, & Souvik Maiti

Stranger danger, the scary truth about invasive species

Source: Greenberg

Some are sharp, some are spotted, and some are beautiful looking, but all invasive species are bad for public lands. Invasive species are organisms that cause ecological or economic harm in a new environment where it is not native. An invasive species can be introduced to new ecosystems through the ballast water of ocean-going ships, intentional and accidental releases of species, aquarium specimens or bait and other means.   

Dog Strangling Vine: Ontario’s Invading Species

Some nonnative species don’t cause harm but those that do can cause the extinction of native species. They often compete with native organisms for resources, reduce biodiversity and alter natural habitats. For example, in Toronto, the dog-strangling vine is an ongoing problem in meadows and understories. In meadows, the plant acts as a filter on plants that are smaller or weaker in competing for resources and takes over the whole landscape. In understories, they were found to replace plants of similar niches. To learn more about this invasive species, watch the interview with expert Darwin Soudhi below. 

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Invasive species thrive and flourish at new locations because of the right biological properties that allow them to grow quickly in numbers. Once they secure their location, they usually reproduce and spread quickly and out-compete native plants and animal species for resources. Most invasive species can survive in a variety of different habitats and climate regions. They often are free of predation and disease. 

These changes, small or large can result in huge economic impacts and fundamental disruptions in all ecosystems. No matter where they came from, how they got here or what trouble they bring, invasive species are a serious concern and immediate action needs to be taken. For more information on how you can help reduce the effects of invasive species, listen to the podcast linked below.

https://soundcloud.com/jumpysnake/so-podcast-final/s-rEmNg

-Ryan Chew, Cindy Liu, Noah Rudlowski

Will you keep it or delete it?

Do you ever check how many photos or apps you have on your phone? Have you ever considered managing your personal data?

Image flicker

If you answered “No” to any of these questions, you might want to rethink about your personal data storage. Most users usually do not keep track of the data on their devices until they are notified that they are running out of storage.

Personal data can be social media accounts, favourite playlists, and even credit card details. You might be surprised to find out how much personal data is shared across devices and online platforms.

It is important to “derive value from your personal data over time,” says Dr. Francesco Vitale, a PhD candidate in Human-Computer Interaction at the University of British Columbia. The process of selecting what to keep and delete could be difficult for users because of their attachment to data. If that is the case, is there any kind of technology that can help facilitate data management?

This is exactly what Dr. Vitale questioned and studied. He used a Research through Design approach to come up with the five new design concepts to analyze people’s opinions towards different approaches of keeping and discarding personal data.

Design Concepts

Patina – a visualization of how frequent the users access the data.

The age of data is shown by using a spiral. A longer spiral means more frequently accessed data. 

Patina Source: Francesco Vitale

Data Recommender – a system that tells users which data needs attention. 

This system is partly incorporated into apps like Google Photos and Files on Android.

Data Recommender Source: Francesco Vitale

Temporary Folder and Temporary App –  both with features that have an “expiration date.” 

Users can decide how long they want to keep certain folders/apps for, and it will be uninstalled automatically.

Temporary Folder Source: Francesco Vitale

Temporary App Source: Francesco Vitale

Future Filters – an app that allows the users to decide what to do with data in the future. 

The users are given choices from a set of actions and criteria in order to decide what happens to the data.

Future Filters Source: Francesco Vitale

Impact in Our Lives

The result of the study showed that opinions on managing data vary between not trusting technology vs. being open-minded about technology managing their data for them. 

Some have mentioned that they do not mind deleting their data off their devices for example, in the case of social media it is “never truly deleted, … there will always be a copy somewhere out there.” Many users store their personal data on online platforms without thinking about the consequences.

Recently, Dr. Vitale participated in a short interview that discusses his research and about how data management affects his life. 

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To further discuss the topic, Science 300 podcasters at UBC decided to cover Dr. Vitale’s research and see how data management affects the lives of students. 

(Podcast credit: Francesco Vitale, Bernice Huynh, Kieffer Silva Pinto, Sara Uzama)

With different views on the topic, perhaps data management is a subject that should be taken more seriously and further investigated. 

-Bernice Huynh, Kieffer Silva Pinto, Sara Uzama

Scientific Explanation for Paranormal Activities

Have you ever experienced paranormal activities? The black shadow standing in the dark, faint voice calling out for help, seeing your deceased-loved ones…

Source: Google image

Source: Google image

Though scary stories are enjoyed by some group of people, the existence of ghosts or spirits are highly debatable topic because of the numerous claims made by number of people that they have seen or heard ghosts.

Ghosts are scientifically impossible to exists because of its ability to do things like passing through the walls or floating in the air, and also because researches that were done on paranormal activities have found no evidence regarding the existence of ghosts.

A study conducted by Baland Jalal found that hallucination and sleep paralysis could play a role in people misunderstanding their experience as paranormal activity. During sleep paralysis, people can feel like they are levitating, having out-of-body experience, and sometimes, they see or hear another figure in the room when they are supposed to be alone. These experiences are hallucination because they are seeing things that are not really not present in reality. Sleep paralysis, on the other hand, are caused by the failure in rapid eye movement cycle. Rapid movement known as the stage of sleep where your eyes literally move rapidly. This eye movement usually happens when people are falling into or coming out of sleep, and to avoid people from acting out their dream in real life, the brain normally paralyze people’s muscles during rapid eye movement sleep. Usually brain turns off the paralysis before you wake up, however in sleep paralysis, you wake up as the paralysis is happening.

What about the case where people heard something?

Megan Fox, an American actress and model, believes in ghost after her first encounter in Mexico. In the interview she did with MTV News, she said that she heard the sound of someone coming into her hotel room and pouring coffee. However, when she decided to go see her breakfast, there was nothing. Since the sound was heard by both Megan and her nanny at the time, she says, “[she] believe[s] in everything.”

A study done by David Smailes considers this as hallucinations. He explains that pareidolia is the cause of this hallucination. Pareidolia is when we try to make sense of a pattern or an image even though there’s no meaning exists. Some examples of this could be seeing a face when looking at the front of the car or seeing a mushroom when looking at the clouds. These images are all result of pareidolia.

Since we are used to relying on our senses, when we experience hallucination, we trust our perceptions and believe it. However, sometimes what you thought you saw or heard could be your brain processing it based on what you captured with the eyes or ears. If this is hard to process, think about the time you misheard that one favorite song of yours. This is a good example of your brain giving an extra information to make sense of things that doesn’t.

 

-Sara Uzama

The pUgly Truth About Flat-Faced Dogs

Image of a pug

Pugs are universally loved and instantly recognizable; yet their iconic face may be the reason for many of their health issues. Courtesy of Charles

Dogs unite and bring joy like little else can.  The sight of their cute noses snuggling up to us can make us feel better and melt even the steeliest of hearts, yet their little snouts may be one of the biggest problems hounding the health of our furry family members.

Pugs are one of the most instantly recognizable dog breeds in the world because of their flat snouts. Like other dogs with flat snouts, pugs are known as brachycephalic and suffer from numerous breathing complications. One of the most fatal of these complications is brachycephalic syndrome and occurs during times when a dog overexerts itself due to excess activity or heat and is not able to oxygenate its blood in time, leading to death.

Most people think that susceptibility to this disease depends on breed, however research published in 2015 by a team from the Royal Veterinary College in the UK suggests otherwise. The researchers looked at 700 dogs of varying breeds and found that the risk of these dogs suffering from brachycephalic obstructive airway syndrome increased very quickly for dogs with shorter snouts. In the study, no dog whose snout was at least half the size of its head was affected with breathing issues, while 80% of the dogs whose snout was less than a tenth of the size of their head suffered. The research seems to present definitive evidence for the added health risks for flat faced dogs, yet the number of pet owners that buy these breeds increase daily.

Many Dogs

Note the differences in how the snout portrudes in the breeds of dog pictured above. Courtesy of Wikimedia Commons

The shape of an organism is hugely important in the wild. Species live and die based on how well their adaptation suits their environment. However, dog breeds are unique. Due to our close relationship with the species, new dog breeds are usually the result of artificial breeding. Short snouts are specifically bred for in dogs because some people love how it looks. While individuals are certainly within their rights to choose to adopt a dog whose aesthetic they like, it seems cruel to subject a living animal to a lower quality of life in order to preserve their look. As the demand for these cute animals increases, unethical or unqualified breeders are pushing these genetic lines to the extreme in order to provide a product that they think consumers want.

For a solution to this issue to be effective it must change some of our fundamental buying behaviours. We cannot let the idea of genetics being a product completely overrule the idea of a dog as a living, breathing organism with rights. Dogs provide us with unconditional love and companionship, the least that we could do for them is make sure that they can breathe properly.

Finally, I have attached a link for owners of dogs with flat faces with helpful videos to help you identify abnormal noises in times of exertion from your dog.
Cambridge University Department of Veterinary Medicine

– Souvik Maiti

Researchers Looking into 2 Week Allergy Treatment

Globally, 220-520 million people suffer from food-related allergies that range from mild discomfort to being the cause of death. Chances are, there is someone in your course affected by this chronic illness. Currently, there are no approved treatments for these allergies other than completely omitting them from your diet, using antihistamines or epinephrine when allergy symptoms appear, or oral immunotherapy. However, it’s very difficult to avoid cross-contamination, especially when you need to eat food someone else has prepared and immunotherapy takes 9-12 months, causing allergic reactions along the way. But what if there was a way to desensitize, even completely remove the immune systems’ response to food that cause allergies in as little as 2 weeks without causing a reaction?

From a small study released on Nov 14, 2019, the researchers from Sean N. Parker Center for Allergy and Asthma Research at Stanford University has found that when targeting the alarmin IL-33 (a signal that initiates inflammatory responses) in peanut-allergic people with etokimab (an antibody injection) there was a 73% increase in the tolerance threshold for the allergy compared to the placebo group. These people could eat moderate amounts of peanuts (no more than 300 mg) 15 days after the injection without having to be expose to the allergen beforehand. This percentage dropped to a 57% increase after 45 days.

Since this is a relatively new study, there are still some improvements to be made on the procedure itself. The sample of the double-blind experiment was only 20 adults with 15  adults receiving estimable and 5 adults receiving the placebo, and the results were self-reported, which can cause a lot of variability in the data. However, the results from this small experiment was promising, and personally, I hope that etokimab will be available for the public use in the next few decades. It would be extremely helpful to eat out without having to worry about being rushed to the hospital due to accidental contamination or even just to see what peanuts would taste like.

-Sharon Li

Is Antibiotic Resistance Our New Biggest Threat?

Throughout history, our advancements in medicine have allowed us to live longer, prevent the spread of certain infectious diseases, fight infections and overall improve our quality of life. However, in recent years some of the important medical breakthroughs we have made as a society have been threatened by antibiotic resistance.

What is antibiotic resistance? In short antibiotic resistance is when antibiotics become less effective at treating the desired infection. It is caused by bacteria who evolve to be able to resist the drugs intended to kill them, so without antibiotics to terminate them, these bacteria begin to flourish and can cause persistent infections which could potentially ultimately lead to death.

A comparative view of non-resistant bacteria and drug resistant bacteria. Image Source: flickr

According to a 2018 study, in 2018 antibiotic resistance rates in Canada were 26%. According to projected models an increase in antibiotic resistance rates in the future could severely impact Canada’s economy. The study states that if resistance rates were to increase to 40% and a possible worse case 100% by 2050, Canada’s economy would be smaller. It could cause a decrease in the employment force which is said to likely have the largest impact in labour intensive jobs. On a global scale, antibiotic resistance could also have severe socioeconomic consequences. It is believed that the cost of treatment for resistant bacterial infection could approximately be 700 US dollars. This will have the largest impact on those who have a lower income and could potentially increase the presence of a socioeconomic divide. So, aside from the obvious medical impacts of antibiotic resistance, there is the various associated issues that arise which can decrease societal progressions.

Currently scientists are attempting to find solutions to this serious threat. A biotechnology company called Genentech has recently had a team of scientists that have developed a drug that can more easily penetrate the cell membranes of certain bacteria. Additionally it proved to be effective against various multidrug-resistant forms of some of these bacteria. Although this drug development is in its early stages, it could be very impactful in reducing antibiotic resistance and solving some of the resulting issues.

 

Image Source: flickr

This week (November 18th– 24th) is considered World Antibiotic Awareness Week, which is important in spreading awareness to the public about how to effectively use antibiotics to mitigate potential increases in antibiotic resistance. Some common ways that you can decrease antibiotic resistance rates are:

  • Follow your medical prescription properly (don’t skip medication days)
  • Don’t take antibiotics for infections such as a cold or the flu
  •  Try to with the help of a doctor see if there are possible solutions to provide comfort aside from the use of antibiotics.

Simple steps like these can be impactful in decreasing antibiotic resistance rates and gives us the power to fight against this looming threat.

 

 

-Shania Mander

Potted Plants: More Than Decoration?

Perhaps there’s a potted plant in your room right now. It may be some species of succulent, a colourful flower, or maybe it’s a quaint bonsai tree. If there is a potted plant, what were your reasons for buying? Was it for aesthetics, to try and liven up your room, or maybe you’re trying to improve your room’s air quality. Have you felt though that you work better or have a better mood in rooms with plants? Are those feelings simply due to placebo, or do plants actually have a positive effect on your health?

Do potted plants have tangible health benefits? Wikimedia

If you bought a plant to get some cleaner air though, you may be out of luck. A recent study found that potted plants aren’t actually that useful in removing large amounts of volatile organic chemicals, and that to get any significant effect you would need quite a few plants. So if you’ve picked out a potted plant to improve your room’s air quality, it may just be better to open a window or use a fan.

However, this isn’t to say that the effects of indoor plants are non-existent or insignificant. There’s been many different studies which suggest that indoor plants do have concrete and quantifiable effects, though these effects are typically on the psychological side, and in our hectic day to day lives, perhaps it’s something we need.

One study shows that interacting with plants actually resulted in the subjects feeling more comforted and soothed, and even resulted in lower diastolic blood pressure. This doesn’t mean that indoor plants will magically cure your high blood pressure, but it does show that indoor plants can have some tangible effect on your mental state. Another study showed that office workers who worked in offices with plants felt better about their job and also felt they had higher quality-of-life compared to workers in offices without any plants.

Not only do indoor plants appear to have positive mental health benefits, it’s also been found that plants can potentially have a positive effect on a person’s creativity and mood. Participants in a study, particularly women, were found to perform better and have a better mood when doing tasks in a room with a potted plant compared to a room with no objects or other objects in it.

The benefits of potted plants are numerous, so perhaps making space for a potted plant if you don’t have one would be a good idea. After all, even the simplest things can help break the occasional monotony of life.