Category Archives: Outreach Project

A new and natural pathway to nitric oxide!

Nitric oxide (NO) is one of the most widely-produced gases in the human body, and has been shown to play a major role in the function of the cardiovascular, nervous, and immune systems. This means that it has implications in the treatment and management of many conditions such as erectile dysfunction, muscle soreness, and Type II diabetes. Despite the numerous processes in which nitric oxide play a role, there are only two known routes of production in living organisms. 

Research jointly published by the Institute of Pharmaceutical Biotechnology at the Zhejiang University School of Medicine in Hangzhou, China and the Department of Chemistry at the University of British Columbia examined one alternative method to the production of nitric oxide. In this pathway, two enzymes are used to generate a chemical compound known as streptozocin that creates NO as a byproduct.

Simplified schematic of the two reactions that occur to produce the N-nitroso compound streptozocin and nitric oxide (NO) as products

This work provides support to the idea that there may be alternative routes to the synthesis of this critically important compound. We spoke to Alyssa Henderson about her work on the project, her experience with research in general, and some of the challenges she faced while working on this publication.

Streptozocin is part of a larger class of N-nitroso compounds, which are identified by the presence of an -N-N=O group in its structure. Alyssa’s research was motivated by the natural presence of N-nitroso compounds in natural products. It was proposed that these compounds, and the biological pathway of its production, could be significant in the production of NO.

Tests were done with a solution containing components of E. coli and stzE (one of the enzymes isolated from the genome of streptozocin), and it was found that stzE is necessary to produce the compounds involved in the second step of the process. 

The next step in this two-enzyme pathway was similarly isolated from the streptozocin genome, and was found to be necessary for the production of the products shown below. Alyssa’s research suggested that nitric oxide is produced in the conversion of compound 3 to compounds 4 and 5, which is catalyzed by stzF.

Structure of the products generated from the second step of the two-enzyme pathway.

In order to explore how widely distributed these genes are, Alyssa’s team found 40 enzyme pairs with similar functions to the stzE/stzF enzyme pair in a variety of soil-dwelling and plant-associated bacteria, which further supports the idea that natural routes to nitric oxide synthesis exist. 

Cell cultures of some of the soil-dwelling bacteria found to have similar enzyme functions to the stzE/stzF pairs

The significance of enzymes in these soil microbes is discussed in the podcast below:

While this paper doesn’t fully explain all of the possible processes that may be involved in the natural production of nitric oxide in the environment, it sets the stage for important advancements in the field.

A Gene that can Save our Crops from Droughts

Drought. Source: Flickr

Costing around 80 billion dollars per year, droughts are one of the most expensive natural disasters in the world due to its negative impacts on agriculture. Additionally, because droughts are unavoidable, it is important for researchers to study the protective surfaces of crops, as it provides a better sense of how to prevent and minimize the devastating effects of droughts on global agriculture.

A study done by Dr. Reinhard Jetter and other researchers from the University of British Columbia, as well as researchers from the Northwest A&F University in China, focussed on this topic of protective plant surfaces, more specifically, the wax surfaces of wheat crops.

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To gain insight on the genomic mechanisms involved in wax synthesis, researchers gathered and experimented on Chinese wheat crops. In particular, the team wanted to determine the gene involved in wax synthesis. Therefore, they placed the wheat crops under stressful drought conditions, so that the crops would overproduce wax. This overproduction allowed for researchers to isolate and study the gene permitting this wax production.

Wheat. Source: Flickr

Through this study, Dr. Jetter and his colleagues confirmed that the TaCER1-1A gene was involved in wax production. TaCER1-1A is a protein, made by the TaCER1-1A gene, that was found to be located in the endoplasmic reticulum of the cell, an important compartment for wax synthesis. Thus, its location and the use of a variety of techniques, one being the production of multiple copies of this gene, were used in order to further study how wax synthesis occurs. From this, the researchers were able to verify that the TaCER1-1A gene was indeed involved in wax synthesis.

The information obtained from this study can help provide insight about the production of wax on crops. These results are particularly important for farmers, as this may aid them in maximizing their crop yield, by making the crops more drought resistant. Therefore, to improve the crop yield, crops can either be genetically modified (GMOs) or undergo selective breeding. Genetically modifying the crops directly alters the genetic material of the crops through genetic engineering in a laboratory. Both selective breeding and GMOs have their own advantages and disadvantages. To learn more about them, listen to the podcast below.

With global warming on the rise, droughts are occurring more than ever before. Therefore, in regards to agriculture, there needs to be an implementation of crops that are able to survive and grow under these stressful conditions without sacrificing one important mechanism to improve another. From the study done by Dr. Jetter and his colleagues, we now know that the specific gene, TaCER1-1A, is one that responds to abiotic stresses such as droughts by producing more wax. Therefore, through improving our understanding of plant mechanisms, how specific genes affect a plant, and how a plant responds to stresses naturally, we can find a pathway to help our crops thrive.

– Anum Khan, Karina To, Sharon Li, & Souvik Maiti

Will you keep it or delete it?

Do you ever check how many photos or apps you have on your phone? Have you ever considered managing your personal data?

Image flicker

If you answered “No” to any of these questions, you might want to rethink about your personal data storage. Most users usually do not keep track of the data on their devices until they are notified that they are running out of storage.

Personal data can be social media accounts, favourite playlists, and even credit card details. You might be surprised to find out how much personal data is shared across devices and online platforms.

It is important to “derive value from your personal data over time,” says Dr. Francesco Vitale, a PhD candidate in Human-Computer Interaction at the University of British Columbia. The process of selecting what to keep and delete could be difficult for users because of their attachment to data. If that is the case, is there any kind of technology that can help facilitate data management?

This is exactly what Dr. Vitale questioned and studied. He used a Research through Design approach to come up with the five new design concepts to analyze people’s opinions towards different approaches of keeping and discarding personal data.

Design Concepts

Patina – a visualization of how frequent the users access the data.

The age of data is shown by using a spiral. A longer spiral means more frequently accessed data. 

Patina Source: Francesco Vitale

Data Recommender – a system that tells users which data needs attention. 

This system is partly incorporated into apps like Google Photos and Files on Android.

Data Recommender Source: Francesco Vitale

Temporary Folder and Temporary App –  both with features that have an “expiration date.” 

Users can decide how long they want to keep certain folders/apps for, and it will be uninstalled automatically.

Temporary Folder Source: Francesco Vitale

Temporary App Source: Francesco Vitale

Future Filters – an app that allows the users to decide what to do with data in the future. 

The users are given choices from a set of actions and criteria in order to decide what happens to the data.

Future Filters Source: Francesco Vitale

Impact in Our Lives

The result of the study showed that opinions on managing data vary between not trusting technology vs. being open-minded about technology managing their data for them. 

Some have mentioned that they do not mind deleting their data off their devices for example, in the case of social media it is “never truly deleted, … there will always be a copy somewhere out there.” Many users store their personal data on online platforms without thinking about the consequences.

Recently, Dr. Vitale participated in a short interview that discusses his research and about how data management affects his life. 

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To further discuss the topic, Science 300 podcasters at UBC decided to cover Dr. Vitale’s research and see how data management affects the lives of students. 

(Podcast credit: Francesco Vitale, Bernice Huynh, Kieffer Silva Pinto, Sara Uzama)

With different views on the topic, perhaps data management is a subject that should be taken more seriously and further investigated. 

-Bernice Huynh, Kieffer Silva Pinto, Sara Uzama