Category Archives: Science Communication

A Gene that can Save our Crops from Droughts

Drought. Source: Flickr

Costing around 80 billion dollars per year, droughts are one of the most expensive natural disasters in the world due to its negative impacts on agriculture. Additionally, because droughts are unavoidable, it is important for researchers to study the protective surfaces of crops, as it provides a better sense of how to prevent and minimize the devastating effects of droughts on global agriculture.

A study done by Dr. Reinhard Jetter and other researchers from the University of British Columbia, as well as researchers from the Northwest A&F University in China, focussed on this topic of protective plant surfaces, more specifically, the wax surfaces of wheat crops.

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To gain insight on the genomic mechanisms involved in wax synthesis, researchers gathered and experimented on Chinese wheat crops. In particular, the team wanted to determine the gene involved in wax synthesis. Therefore, they placed the wheat crops under stressful drought conditions, so that the crops would overproduce wax. This overproduction allowed for researchers to isolate and study the gene permitting this wax production.

Wheat. Source: Flickr

Through this study, Dr. Jetter and his colleagues confirmed that the TaCER1-1A gene was involved in wax production. TaCER1-1A is a protein, made by the TaCER1-1A gene, that was found to be located in the endoplasmic reticulum of the cell, an important compartment for wax synthesis. Thus, its location and the use of a variety of techniques, one being the production of multiple copies of this gene, were used in order to further study how wax synthesis occurs. From this, the researchers were able to verify that the TaCER1-1A gene was indeed involved in wax synthesis.

The information obtained from this study can help provide insight about the production of wax on crops. These results are particularly important for farmers, as this may aid them in maximizing their crop yield, by making the crops more drought resistant. Therefore, to improve the crop yield, crops can either be genetically modified (GMOs) or undergo selective breeding. Genetically modifying the crops directly alters the genetic material of the crops through genetic engineering in a laboratory. Both selective breeding and GMOs have their own advantages and disadvantages. To learn more about them, listen to the podcast below.

With global warming on the rise, droughts are occurring more than ever before. Therefore, in regards to agriculture, there needs to be an implementation of crops that are able to survive and grow under these stressful conditions without sacrificing one important mechanism to improve another. From the study done by Dr. Jetter and his colleagues, we now know that the specific gene, TaCER1-1A, is one that responds to abiotic stresses such as droughts by producing more wax. Therefore, through improving our understanding of plant mechanisms, how specific genes affect a plant, and how a plant responds to stresses naturally, we can find a pathway to help our crops thrive.

– Anum Khan, Karina To, Sharon Li, & Souvik Maiti

Will you keep it or delete it?

Do you ever check how many photos or apps you have on your phone? Have you ever considered managing your personal data?

Image flicker

If you answered “No” to any of these questions, you might want to rethink about your personal data storage. Most users usually do not keep track of the data on their devices until they are notified that they are running out of storage.

Personal data can be social media accounts, favourite playlists, and even credit card details. You might be surprised to find out how much personal data is shared across devices and online platforms.

It is important to “derive value from your personal data over time,” says Dr. Francesco Vitale, a PhD candidate in Human-Computer Interaction at the University of British Columbia. The process of selecting what to keep and delete could be difficult for users because of their attachment to data. If that is the case, is there any kind of technology that can help facilitate data management?

This is exactly what Dr. Vitale questioned and studied. He used a Research through Design approach to come up with the five new design concepts to analyze people’s opinions towards different approaches of keeping and discarding personal data.

Design Concepts

Patina – a visualization of how frequent the users access the data.

The age of data is shown by using a spiral. A longer spiral means more frequently accessed data. 

Patina Source: Francesco Vitale

Data Recommender – a system that tells users which data needs attention. 

This system is partly incorporated into apps like Google Photos and Files on Android.

Data Recommender Source: Francesco Vitale

Temporary Folder and Temporary App –  both with features that have an “expiration date.” 

Users can decide how long they want to keep certain folders/apps for, and it will be uninstalled automatically.

Temporary Folder Source: Francesco Vitale

Temporary App Source: Francesco Vitale

Future Filters – an app that allows the users to decide what to do with data in the future. 

The users are given choices from a set of actions and criteria in order to decide what happens to the data.

Future Filters Source: Francesco Vitale

Impact in Our Lives

The result of the study showed that opinions on managing data vary between not trusting technology vs. being open-minded about technology managing their data for them. 

Some have mentioned that they do not mind deleting their data off their devices for example, in the case of social media it is “never truly deleted, … there will always be a copy somewhere out there.” Many users store their personal data on online platforms without thinking about the consequences.

Recently, Dr. Vitale participated in a short interview that discusses his research and about how data management affects his life. 

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To further discuss the topic, Science 300 podcasters at UBC decided to cover Dr. Vitale’s research and see how data management affects the lives of students. 

(Podcast credit: Francesco Vitale, Bernice Huynh, Kieffer Silva Pinto, Sara Uzama)

With different views on the topic, perhaps data management is a subject that should be taken more seriously and further investigated. 

-Bernice Huynh, Kieffer Silva Pinto, Sara Uzama

Scientific Explanation for Paranormal Activities

Have you ever experienced paranormal activities? The black shadow standing in the dark, faint voice calling out for help, seeing your deceased-loved ones…

Source: Google image

Source: Google image

Though scary stories are enjoyed by some group of people, the existence of ghosts or spirits are highly debatable topic because of the numerous claims made by number of people that they have seen or heard ghosts.

Ghosts are scientifically impossible to exists because of its ability to do things like passing through the walls or floating in the air, and also because researches that were done on paranormal activities have found no evidence regarding the existence of ghosts.

A study conducted by Baland Jalal found that hallucination and sleep paralysis could play a role in people misunderstanding their experience as paranormal activity. During sleep paralysis, people can feel like they are levitating, having out-of-body experience, and sometimes, they see or hear another figure in the room when they are supposed to be alone. These experiences are hallucination because they are seeing things that are not really not present in reality. Sleep paralysis, on the other hand, are caused by the failure in rapid eye movement cycle. Rapid movement known as the stage of sleep where your eyes literally move rapidly. This eye movement usually happens when people are falling into or coming out of sleep, and to avoid people from acting out their dream in real life, the brain normally paralyze people’s muscles during rapid eye movement sleep. Usually brain turns off the paralysis before you wake up, however in sleep paralysis, you wake up as the paralysis is happening.

What about the case where people heard something?

Megan Fox, an American actress and model, believes in ghost after her first encounter in Mexico. In the interview she did with MTV News, she said that she heard the sound of someone coming into her hotel room and pouring coffee. However, when she decided to go see her breakfast, there was nothing. Since the sound was heard by both Megan and her nanny at the time, she says, “[she] believe[s] in everything.”

A study done by David Smailes considers this as hallucinations. He explains that pareidolia is the cause of this hallucination. Pareidolia is when we try to make sense of a pattern or an image even though there’s no meaning exists. Some examples of this could be seeing a face when looking at the front of the car or seeing a mushroom when looking at the clouds. These images are all result of pareidolia.

Since we are used to relying on our senses, when we experience hallucination, we trust our perceptions and believe it. However, sometimes what you thought you saw or heard could be your brain processing it based on what you captured with the eyes or ears. If this is hard to process, think about the time you misheard that one favorite song of yours. This is a good example of your brain giving an extra information to make sense of things that doesn’t.

 

-Sara Uzama

The pUgly Truth About Flat-Faced Dogs

Image of a pug

Pugs are universally loved and instantly recognizable; yet their iconic face may be the reason for many of their health issues. Courtesy of Charles

Dogs unite and bring joy like little else can.  The sight of their cute noses snuggling up to us can make us feel better and melt even the steeliest of hearts, yet their little snouts may be one of the biggest problems hounding the health of our furry family members.

Pugs are one of the most instantly recognizable dog breeds in the world because of their flat snouts. Like other dogs with flat snouts, pugs are known as brachycephalic and suffer from numerous breathing complications. One of the most fatal of these complications is brachycephalic syndrome and occurs during times when a dog overexerts itself due to excess activity or heat and is not able to oxygenate its blood in time, leading to death.

Most people think that susceptibility to this disease depends on breed, however research published in 2015 by a team from the Royal Veterinary College in the UK suggests otherwise. The researchers looked at 700 dogs of varying breeds and found that the risk of these dogs suffering from brachycephalic obstructive airway syndrome increased very quickly for dogs with shorter snouts. In the study, no dog whose snout was at least half the size of its head was affected with breathing issues, while 80% of the dogs whose snout was less than a tenth of the size of their head suffered. The research seems to present definitive evidence for the added health risks for flat faced dogs, yet the number of pet owners that buy these breeds increase daily.

Many Dogs

Note the differences in how the snout portrudes in the breeds of dog pictured above. Courtesy of Wikimedia Commons

The shape of an organism is hugely important in the wild. Species live and die based on how well their adaptation suits their environment. However, dog breeds are unique. Due to our close relationship with the species, new dog breeds are usually the result of artificial breeding. Short snouts are specifically bred for in dogs because some people love how it looks. While individuals are certainly within their rights to choose to adopt a dog whose aesthetic they like, it seems cruel to subject a living animal to a lower quality of life in order to preserve their look. As the demand for these cute animals increases, unethical or unqualified breeders are pushing these genetic lines to the extreme in order to provide a product that they think consumers want.

For a solution to this issue to be effective it must change some of our fundamental buying behaviours. We cannot let the idea of genetics being a product completely overrule the idea of a dog as a living, breathing organism with rights. Dogs provide us with unconditional love and companionship, the least that we could do for them is make sure that they can breathe properly.

Finally, I have attached a link for owners of dogs with flat faces with helpful videos to help you identify abnormal noises in times of exertion from your dog.
Cambridge University Department of Veterinary Medicine

– Souvik Maiti

Researchers Looking into 2 Week Allergy Treatment

Globally, 220-520 million people suffer from food-related allergies that range from mild discomfort to being the cause of death. Chances are, there is someone in your course affected by this chronic illness. Currently, there are no approved treatments for these allergies other than completely omitting them from your diet, using antihistamines or epinephrine when allergy symptoms appear, or oral immunotherapy. However, it’s very difficult to avoid cross-contamination, especially when you need to eat food someone else has prepared and immunotherapy takes 9-12 months, causing allergic reactions along the way. But what if there was a way to desensitize, even completely remove the immune systems’ response to food that cause allergies in as little as 2 weeks without causing a reaction?

From a small study released on Nov 14, 2019, the researchers from Sean N. Parker Center for Allergy and Asthma Research at Stanford University has found that when targeting the alarmin IL-33 (a signal that initiates inflammatory responses) in peanut-allergic people with etokimab (an antibody injection) there was a 73% increase in the tolerance threshold for the allergy compared to the placebo group. These people could eat moderate amounts of peanuts (no more than 300 mg) 15 days after the injection without having to be expose to the allergen beforehand. This percentage dropped to a 57% increase after 45 days.

Since this is a relatively new study, there are still some improvements to be made on the procedure itself. The sample of the double-blind experiment was only 20 adults with 15  adults receiving estimable and 5 adults receiving the placebo, and the results were self-reported, which can cause a lot of variability in the data. However, the results from this small experiment was promising, and personally, I hope that etokimab will be available for the public use in the next few decades. It would be extremely helpful to eat out without having to worry about being rushed to the hospital due to accidental contamination or even just to see what peanuts would taste like.

-Sharon Li

Mars: The New Earth?

If Earth becomes inhabitable due to the alarming rate at which climate change is occurring, is there a possibility for humans to live on Mars?

Previously, the idea of human life proliferation on Mars was mainly expressed in science-fiction. However, a recent study reveals a new application of a material to make Mars habitable for human life.

picture of Mars

Source: Pixabay

Scientists have investigated a new approach to the obstacle of terraforming Mars and making it a habitable planet through the usage of silica aerogels.

Silica aerogel is a solid and transparent material with extreme low density, and thermal conductivity. Its structure is composed of microscopic networks of silicon oxide; therefore, allowing it to be an extremely porous material with 97% of its volume composed of air. Because of these factors, currently, aerogels are widely known for its use as insulators and can be found in wetsuits, firefighter suits, skylights, windows, rockets, paints, cosmetics, and even on NASA’s Mars Rovers.

picture of silica aerogel Source: NASA

Scientists believe that due to its insulating properties, when placed in the atmospheric regions over surface areas that are ice carbon-dioxide rich on Mars, a 2 to 3cm layer thick of silica aerogel could allow constant visible light to transmit onto the surface and melt the Mars’ solid carbon dioxide into gas. The aerogel would trap the carbon dioxide gas to mimic the Earth’s greenhouse gas effect and as a result, allow for base photosynthesis to occur, perhaps granting the beginnings of life proliferation on our neighbouring planet. Additionally, this porous material is found to successfully block both ultraviolet and infrared radiation and its thermal conductivity characteristics can raise temperatures underneath to above the melting point of water, without the need for any internal heat source. The discovered key features of this material could provide scientists with the early steps to Mars’ terraformation.

The application of the silica aerogel can be tested in hostile environment currently on Earth that mimic the environmental conditions on Mars, such as Antarctica and Chile’s Atacama desert to study its effectiveness. However, additional factors to the living conditions on Mars such as atmospheric pressure, nutrient availability and dust deposition still need to be considered in this on-going research.

Although this discovery does not provide us with a solution to the Earth’s climate change, this new application of the aerogel could shift the focus on the solution to global warming indefinitely. Through this finding, perhaps the there is a possibility for humans to live on Mars after all.

More information about the synthesis of the silica aerogel can be found here:

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– Bernice Huynh

Bacteria Can Change Shape to Avoid Antibiotics?!

Can bacteria now consciously make the decision to change its’ shape to avoid being targeted by antibiotics? This article titled “Bacteria caught changing shape to evade antibiotics” seems to think so. However, upon reading this article, I discovered that it’s not that the bacteria makes the conscious decision to change its’ shape in order to avoid being targeted by antibiotics, but rather, the environment that the bacteria is in allows it to shed its’ cell wall. The title of the article is extremely misleading, and can cause undeserved panic because it is implying that bacterial organisms that are damaging to humans have evolved to the point where humans can no longer control them.

TEM of L-form bacteria from Mark Leaver of Newcastle University

If you continue to read the article, you’ll also discover that this certain strain of bacteria can’t evade all antibiotics. It can only make antibiotics that target the cell wall of the bacteria ineffective. There are antibiotics specifically made for targeting cell walls because there aren’t any human cells with cell walls, which makes it easier for the antibiotics to target the right cell. However, bacteria can shed its’ cell wall under non-hostile conditions such as an environment with high sugar concentration. By shedding that wall, the bacteria makes itself harder to detect by the antibiotics and our own immune system. That means that there is one less thing to differentiate the bacteria cell from our own human cell.

With a strong and healthy immune system, the L-form bacteria can eventually be destroyed. It is a little bit more complicated for people with weaker immune systems because they need help from antibiotics, but the antibiotics are ineffective because bacteria will stay in their L-form until the antibiotics leave the system, in which case the cell wall forms again.

Ultimately, there is no need to be worried that bacteria have evolved to consciously change its’ shape to avoid being targeted by our immune system or by antibiotics because it doesn’t. All the bacteria is doing is performing the functions it is programmed to do, like setting up protection against a hostile environment whether it is with a cell wall or without one.

-Sharon Li

 

Deepfake Technology: Can you Tell what’s Real and Fake?

Artificial Intelligence (AI) has improved remarkably since its invention. It has a variety of uses from data analysis, robotics, and applications in the medical field. All these advancements have made impressive societal impacts, however are recent progressions in AI contributing more harm than good to society?

Generative adversarial networks (GAN’s) are a dual AI system which can simply be defined as AI’s which work against each other to improve each other. One AI system considered the generator, develops content and the other AI system determines whether it is fake or not. Every time the secondary AI correctly establishes that a generated piece of content is fake, it provides feedback to the generating AI so that it can improve at producing more believable content. This is an example of machine learning, as the AI systems are continuously bettering themselves from experience without the need to be specifically programmed. This AI technology is considered a neural network as it was created to resemble a human’s neural network, so that the computers will learn like humans.

This leads us to the question as to why GAN’s can be considered harmful? This is because GAN’s are used to create Deepfakes. The term deepfake is used to describe video and audio recordings which have been generated through machine learning. These videos are not real but can be very convincing.

The above video shows a side by side comparison of Robert De Niro and Al Pacino in the film Taxi Driver. In the original film Robert De Niro is the actual actor, however in this video through the use of deepfake technology the actor Al Pacino looks just as authentic as the lead.

                                                     Source https://en.wikipedia.org/wiki/File:Woman_1.jpg#filelinks

Another example of the power of GAN’s is the image above. The picture is a generated image from a GAN and despite how real or familiar this person looks the image is not of a real person. Sites such as “this person doesn’t exist”  are an entertaining way to witness the abilities of these GAN’s, as on this site every time you refresh the page a new generated image of a fake person is displayed.

For purposes like film production, the use of deepfake technology could actually be quite helpful, however it could also be used for much more damaging motives. Technology like this could be used for propaganda in political campaigns. For example videos could be produced of political candidates saying damaging words which would impact their campaign, however these videos could all be fake and a product of deepfake technology. This causes the overall manipulation of information. Additionally this causes a serious impact in the way information is communicated to the public. It also could potentially decrease the public’s trust in true information as it will become harder to decipher what is real from what is fake.

In a study earlier this year researchers had found that although currently it still takes technical skill and a team effort to produce realistic simulations of people’s faces, it is slowly developing to becoming a more automated and accessible technology. If a wider range of people have the ability to use this there are countless ways this technology can be applied; good and bad.

To prepare for this potential increase of deepfakes making its way online, we should be wearier and more critical of videos and information we are presented in the media and online. It is important for us to be aware of the presence of deepfakes so that we can be less susceptible to believing in false information.

 

 

-Shania Mander

Mars: the new Earth?

With the alarming rate of climate change occurring on Earth, will the planet the we call “home” eventually become uninhabitable?

Although it was previously believed that human life could only survive on Earth, a recent study reveals a way to make Mars habitable.

picture of Mars  Source: Pixabay

Instead of trying to make Mars more similar to Earth through atmospheric modifications, Scientists have discovered a new approach to the obstacle of finding a second habitable planet through the usage of silica aerogels.

This material, when placed over regions that are ice-rich on Mars could allow constant visible light to transmit onto the surface for photosynthesis to occur. It could also block ultraviolet radiation and even raise the temperatures underneath to above the melting point of water, without the need for any internal heat source. In addition to these factors, scientists believe that a 2 to 3cm layer thick of silica aerogel get could potentially be equivalent to the Earth’s atmospheric greenhouse effect, thus allowing the beginnings of life proliferation on our neighbouring planet.

Silica aerogel is a solid material with extreme low density, and thermal conductivity. It is an extremely porous material and is currently widely known for its use as an insulator. Currently, aerogels can be found in wetsuits, firefighter suits, skylights, windows, rockets, paints, cosmetics, and even nuclear weapons. However, this new application of the aerogel could shift the focus on the solution to climate change and global warming indefinitely.

The application of the silica aerogel can be tested in hostile environment currently on Earth, such as Antarctica and Chile’s Atacama desert. However, additional factors to the living conditions on Mars such as atmospheric pressure, nutrient availability and dust deposition still need to be considered in this on-going research.

But, through this discovery, perhaps the idea of living on Mars not too far-fetched after all.

Image of Fingers Source: flickr

– Bernice Huynh