journal papers

“Transcriptome Sequencing of the Anterior Cingulate in Bipolar Disorder: Dysregulation of G Protein-Coupled Receptors” C. Cruceanu C, P. P. Tan, S. Rogic, J. P. Lopez, S. G. Torres-Platas, C. O. Gigek, M. Alda, G. A. Rouleau, P. Pavlidis, G. Turecki. Am J Psychiatry. 2015 Aug 4

“Meta-Analysis of Gene Expression in Autism Spectrum Disorder” S. Ch’ng, W. Kwok, S. Rogic, P. Pavlidis. Autism Res. 2015 Feb 26

“An RCOR1 loss-associated gene expression signature identifies a prognostically significant DLBCL subgroup” F. C. Chan, A. Telenius, S. Healy, S. Ben-Neriah, A. Mottok, R. Lim, M. Drake, S. Hu, J. Ding, G. Ha, D. W. Scott, R. Kridel, A. Bashashati, S. Rogic, N. Johnson, R. D. Morin, L. M. Rimsza, L. Sehn, J. M. Connors, M. A. Marra, R. D. Gascoyne, S. P. Shah, C. Steidl. Blood. 2015 Feb 5;125(6):959-66.

“Recurrent Somatic Mutations of PTPN1 in Primary Mediastinal B cell lymphoma and Hodgkin Lymphoma” J. Gunawardana, F. C. Chan, A. Telenius, B. Woolcock, R. Kridel, K. L. Tan, S. Ben-Neriah, A. Mottok, R. S. Lim, M. Boyle, S. Rogic, L. M. Rimsza, C. Guiter, K. Leroy, P. Gaulard, C. Haioun, M. A. Marra, K. J. Savage, J. M. Connors, S. P. Shah, R. D. Gascoyne, and C. Steidl. Nature Genetics. 2014 February 16.

“Mutational and structural analysis of diffuse large B-cell lymphoma using whole genome sequencing” R. D. Morin, K. Mungall, E. Pleasance, A. J. Mungall, R. Goya, R. Huff, D. W. Scott, J. Ding, A. Roth, R. Chiu, R. D. Corbett, F. Chun Chan, M. Mendez-Lago, D. L. Trinh, M. Bolger-Munro, G. Taylor, A. Hadj Khodabakhshi, S. Ben-Neriah, J. Pon, B. Meissner, B. Woolcock, N. Farnoud, S. Rogic, E. Lim, N. A. Johnson, S. Shah, S. Jones, C. Steidl, R. Holt, I. Birol, R. Moore, J. M. Connors, R. D. Gascoyne, and M. A. Marra. Blood 122(7):1256-65 (2013).

“The E3 ubiquitin ligase UBR5 is recurrently mutated in mantle cell lymphoma” B. Meissner, R. Kridel, R. S. Lim, S. Rogic, K. Tse, D. W. Scott, R. Moore, A. J. Mungall, M. A. Marra, J. M. Connors, C. Steidl, R. D. Gascoyne. Blood 121(16):3161-4 (2013).

“Concurrent Expression of MYC and BCL2 in Diffuse Large B-Cell Lymphoma Treated With Rituximab Plus Cyclophosphamide, Doxorubicin, Vincristine, and Prednisone” N.A. Johnson, G. W. Slack, K. J. Savage, J. M. Connors, S. Ben-Neriah, S. Rogic, D. W. Scott, K. L. Tan, C. Steidl, L. H. Sehn, W. C. Chan, J. Iqbal, P. N. Meyer, G. Lenz, G. Wright, L. M. Rimsza, C. Valentino, P. Brunhoeber, T. M. Grogan, R. M. Braziel, J. R. Cook, R. R. Tubbs, D. D. Weisenburger, E. Campo, A. Rosenwald, G. Ott, J. Delabie, C. Holcroft, E. S. Jaffe, L. M. Staudt, R. D. Gascoyne. J Clin Oncol 30(28):3452-9 (2012).

“TBL1XR1/TP63: a novel recurrent gene fusion in B-cell non-Hodgkin lymphoma”
D. W. Scott, K. L. Mungall, S. Ben-Neriah, S. Rogic, R. D. Morin, G. W. Slack, K. L. Tan, F. C. Chan, R. S. Lim, J. M. Connors, M. A. Marra, A. J. Mungall, C. Steidl, and R. D. Gascoyne. Blood 119(21):4949-52 (2012).

“Whole transcriptome sequencing reveals recurrent NOTCH1 mutations in mantle cell lymphoma” R. Kridel, B. Meissner, S. Rogic, M. Boyle, A. Telenius, B. Woolcock, J. Gunawardana, C. Jenkins, C. Cochrane, S. Ben-Neriah, K. Tan, S. Opat, L. H. Sehn, J. M. Connors, A. P. Weng, C. Steidl, and R. D. Gascoyne. Blood 119(9):1963-71 (2012).

“SNP Analysis of Minimally Evolved t(14;18)(q32;q21)-Positive Follicular Lymphomas Reveals a Common Copy-Neutral Loss of Heterozygosity Pattern” K. J. Cheung, S. Rogic, S. Ben-Neriah, M. Boyle, J. M. Connors, R. D. Gascoyne, and D. E. Horsman. Cytogenet Genome Res 136:38-43 (2012).

“Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma” R. D. Morin, M. Mendez-Lago, A. J. Mungall, R. Goya, K. L. Mungall, R. D. Corbett, N. A. Johnson, T. M. Severson, R. Chiu, M. Field, S. Jackman, M. Krzywinski, D. W. Scott, D. L. Trinh, J. Tamura-Wells, S. Li, M. R. Firme, S. Rogic, M. Griffith, S. Chan, O. Yakovenko, I. M. Meyer, E. Y. Zhao, D. Smailus, M. Moksa, S. Chittaranjan, L. Rimsza, A. Brooks-Wilson, J. J. Spinelli, S. Ben-Neriah, B. Meissner, B. Woolcock, M. Boyle, H. McDonald, A. Tam, Y. Zhao, A. Delaney, T. Zeng, K. Tse, Y. Butterfield, I. Birol, R. Holt, J. Schein, D. E. Horsman, R. Moore, S. J. Jones, J. M. Connors, M. Hirst, R. D. Gascoyne, and M. A. Marra. Nature 476:298-303 (2011).

“Meta-analysis of kindling-induced gene expression changes in the rat hippocampus” S. Rogic and P. Pavlidis. Front Neurosci 3:53 (2009).

“Correlation between the secondary structure of pre-mRNA introns and the efficiency of splicing in Saccharomyces cerevisiaeS. Rogic, B. Montpetit, H. H. Hoos, B. F. F. Ouellett, and P. Hieter. BMC Genomics 9:355 (2008).

“GeneComber: combining outputs of gene prediction programs for improved results” S. P. Shah, G. P. McVicker, A. K. Mackworth, S. Rogic, and B. F. F. Ouellette. Bioinformatics 19(10): 1296-1297 (2003).

“Improving Gene Recognition Accuracy by Combining Predictions from Two Gene-Finding Programs” S. Rogic, B. F. F. Ouellette, and A. K. Mackworth. Bioinformatics 16(8): 1034-1045 (2002).

“Evaluation of gene finding programs on mammalian sequences” S. Rogic, A. K. Mackworth and B. F. F. Ouellette. Genome Research 11: 817-832 (2001).

“A physical map of the human genome” The International Human Genome Mapping Consortium*. Nature 409: 934-941 (2001).


“The Role of pre-mRNA secondary structure in gene splicing in Saccharomyces cerevisiae” Ph.D. Thesis (2006).

“Evaluating and Improving the Accuracy of Computational Gene Finding on Mammalian DNA Sequences” Master Thesis (2000).