Tag Archives: Genetics

Is the Secret to Longevity in our Genes?

Increasing life expectancies of the world. (Source: Wikimedia Commons)

Lifestyle and luck aside, the average human in the twenty-first century has a life expectancy of 80 years. For many people this may seem like a long time, but what about people who live to 100 years old or even older? Is there some secret to longevity they are not telling us?

The small fraction of the population who live to the age of 100 or more are called centenarians. An even smaller fraction of people, who live to be significantly older than 100 are supercentenarians. If you ask them what it takes to live a long life, you will get a wide range of answers: “morning walks and chocolate”, “tell the truth”, “raw eggs and no husband.” Although these answers cannot be directly correlated with longevity, scientists are looking for answers in our DNA.

It is true that a supercentenarian will have few than usual DNA variations known to increase the risk of heart disease, Alzheimer’s disease and other ailments, but researchers believe there is more to it than just luck. They suggest that there is a genetic code that actively protects against aging. This could explain why some supercentenarians are actually more healthy overall, than centenarians in the final months of their life.

DNA strands: Possibly hold the answer to longevity. (Source PublicDomainPictures)

Finding this sequence this is understandably hard since this “survival” phenotype is so rare and nonspecific. Of the billions of A’s, T’s, C’s, and G’s that make up our genetic code, it is hard to distinguish where these mutations occur and even more difficult to collect enough genotypes to confirm the theory.

Despite the odds, researchers published an article that identifies new variants in chromosomes 4 and 7 associated with extreme survival and reduced risk for diseases. The study used 2,070 individuals who were the one percentile of survival for the 1900 U.S. year and analyzed their genomes. They found that there are longevity-associated variants (LAV) and survival to extreme age at death (eSAV) variants, LAV being more common in centenarians. Although this far from confirms proof of a healthy aging gene, it a step forward in unlocking the secrets of living a long, healthy life.

-Mya Dodd

Indestructible Water Bears

Water Bears. Courtesy of Wikimedia Commons.

Tardigrades, also known as water bears, are microscopic animals that have intrigued scientists for many years. What about them is so captivating? The fact that they are nearly indestructible.

Water bears have been treated to extreme environments, and against all odds, their survival has been astounding. They can survive temperatures ranging from -328 – 300 degrees Fahrenheit, pressures of up to 6000 times our atmosphere, and even…10 days in space!

The question though, is how do they do it?

Theories have gone as far as to suggest that the reason water bears can survive these extremes, is that they came from other planets. Personally, this idea seems impossible, but could it hold a glimmer of truth?

Scientists conducted further research and found a reason for their survival. The reason is anhydrobiosis. Anhydrobiosis is a dormant state where an organism reduces their metabolic activity significantly and becomes almost completely dehydrated. As it turns out, water bears in extreme environments tend to curl up into a dehydrated ball called a tun. In this form, water bears can survive for decades or longer.

If most living organisms were to enter this state of desiccation, they would not be able to come back from it, but water bears can. According to Thomas Boothby, a Life Sciences Research Foundation Postdoctoral Fellow at the University of North Carolina:

“[T]ardigrades have evolved unique genes that allow them to survive drying out. In addition, the proteins that these genes encode can be used to protect other biological material—like bacteria, yeast, and certain enzymes—from desiccation.”

Water bears seem like very interesting creature to study, and it makes sense for scientists to be captivated by their incredible survival rates in extreme conditions. More intensive research on these water bears could lead to amazing discoveries in the future.

~ Sajni Shah

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Why are dogs so friendly?

People started raising dogs about 14,000 years ago. Dogs are believed to be the very first domesticated animals. I have a dog as well, a 4-year-old German Shepherd called BeiBei. BeiBei came to my home when he was only three months old. At first, he was naughty and a little bit ‘aggressive’ (because nobody had ever told him not to bite and biting was his particular way to play with others), but finally he became a clever, loyal and friendly grown-up.

A photo of BEIBEI and me. (credit to baojing Jin, My mum)

For centuries, dogs are considered as the best friends of humans. When it comes to dogs, ‘friendly’ must be the first word popping up in most people’s heads. However, wolves, another species from canis, were first cultivated by humans due to some evolutionary advantage but nobody succeeded at all. And even baby wolves were not likely to be docile.

So have you ever thought about why, exactly, dogs are much more friendly than wolves or other kinds of animals? The answer remained unknown until 2010, when a study on DNA of dogs and wolves was published by Bridgett, a geneticist from vonHoldt of Princeton University, and colleagues.

The core difference was discovered in a gene related to social behaviours called WBSCR17, which claimed that the gene difference makes dogs so friendly and influences dogs’ domestication. Gene difference is also the reason why dogs can be trained to sit or shake hands using food rewards while you might be dead right away if you are trying to do the same things to wolves.

He sat down in order to get the frisbee from my hand. (credits to myself)

So a new project comparing the DNA of domestic dogs and wolves raised by humans was carried out then. In the experiment, dogs seemed to pay more attention on humans than wolves. Analyzing the DNAs of them, genes called GTF2I and GTF2IRD1, other than WBSCR17, are different. In addition, these genes are also related to the social behaviours in humans. What’s more, WBSCR17 genes help dogs adapt themselves to live with humans. Similar, other domestic animals, namely cats and mice, have genes of the same functions enabling them to be tamer than wild animals.

So now you can answer the question: Why are dogs so friendly? The reason is just a handful of changes in special genes, GTF2I and GTF2IRD1 and WBSCR17. From the perspective of genetics, dogs are indeed good friends of humans.

-Xinyue Chen

Moving Toward to Evolution’s Frontier

The current frontier in evolutionary genetics involves discovering how the evolution of new gene function is correlated with animal form diversification. A gene is a section of DNA in an organism that tells the organism what to produce to be able to look and act the way it does.

Understanding how species form throughout evolution can allow us to predict how our world will change in the future. A new technique has been developed that allows scientists to look specifically at genes, helping to broaden our knowledge.

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Figure 1. A section of DNA which contains multiple forms of genes. The CRISPR/cas9 technology will make specific cuts in the DNA to remove individual genes. (Image Source)

The new CRISPR/cas9 method uses a nuclease, an enzyme that can cut DNA, and a synthetic guide RNA, a molecule that specifically binds to DNA. Precise cuts can be made in the genome that allow a particular gene to be deleted, effectively terminating that genes phenotypic expression (what can be observed).

This new technology was a scientific breakthrough that caught a lot of media attention when initially published. There is currently a moral dispute in the media due to the potential of modifying human babies with this technique. Being able to effectively communicate the new advances with this technology is necessary to get grant money to continue the research, and to show its importance to the public.

Recently, there have been several breakthroughs at Cornell University looking at the optix gene in butterflies, a master gene for wing pattern adaptation. The scientists discovered that the gene has different pigmentation and structural colouration functions, depending on the butterfly species.

Zhang et al. stated than until now the developmental function of the optix gene was unclear. By using the new CRISPR/cas9 method, they were able to observe species with this gene turned off. This gave the researchers a clear analysis on how the wings were directly affected by optix.

Figure 2. The Buckeye butterfly with the optix gene still intact. Without it , its wings will turn an iridescent blue. (Image Source)

Zhang et al. found that different species of butterflies had different reactions when the optix gene was turned off. The Junonia genus, including butterflies commonly known as Buckeyes, had their normal orange-brown wings turn iridescent blue when the optix gene was deleted.

Figure 3. The Gulf Fritillary butterfly with the optix gene intact. Without the optix gene, it will undergo melanization which turns its wings black and grey. (Image Source)

 

However, other species of butterflies, like the Gulf fritillary (A. vanillae), had melanin replace their normal pigments, which then produced black and grey colours.

 

 

 

Seeing how this master gene is conserved in butterflies allows scientists to make increasingly accurate predictions of past evolutionary change. They have stepped toward understanding how DNA specifies 3D structure by first looking at a manageable 2D gene form. In the future, Dr. Reed, one of the other scientists on the team, wishes to recreate butterfly wing pattern in different distinctive species.

This deep understanding of the optix gene will provide further knowledge into the evolution of butterfly wing colour adaptation. By understanding more about butterfly evolution, we can better understand evolution as a whole. Each step towards new knowledge provides a better basis for predicting future changes in genetics.

Author: Thryn Irwin