Author Archives: Xinyue Chen

Method of the Year: Cryo-electron Microscopy

Cr to Nicolae Sfetcu

High Resolution of Detailed Structures (Credits to Nicolae Sfetcu)

About one month ago, Jacques Dubochet, Joachim Frank and Richard Henderson awarded the Nobel Price in Chemistry 2017 for developing the cryo-electron microscopy. The National Institutes of Health named cryo-electron microscopy ‘method of the year’. Cryo-electron microscopy can image frozen-hydrated specimens in native state without dyes at low temperatures through electron microscopy. Using this technology, scientists have produced three-dimensional images to target cancer drugs and demystify the Zika virus.

Cancer drug target visualized at atomic resolution (credits to NIH Image Gallery)

Actually, the development of cryo-electron microscopy has a long history. Previously, scientists used cumbersome dyes, stains or labels to visualize cell function, which would change the behaviour of the cell function and only provide a coarse two-dimensional image. This made scientists hard to understand molecular biology clearly since how the components in the cells looked like and what functions they performed remained unknown.

However, from 1975 to 1986, Joachim Frank stitched two-dimensional micrographs together to yield a sharp three-dimensional image. In 1990, Richard Henderson used this principle to visualize a protein in three-dimensional down to atoms with an electron microscope. In the early 1980s, Jacques Dubochet discovered that water would form a solid shell without freezing by rapidly cooling a specimen before putting it in an electron microscope, which could keep biological structures in original shape during scanning. They produced the desired atomic resolution in 2013. And researchers can now routinely produce three-dimensional structures of biomolecules.

Combining these theories, scientists could take biologically-accurate snapshots of the tiniest units of life. This technology helps scientists understand diseases better and develop better drugs. For instance, scientists found unique parts of the pathogen’s structure in the Zika virus and identified a potential target for a vaccine.

Improving resolution by cryo-EM (credits to NIH Image Gallery)

Engineers have developed better hardware to help improve cryo-electron microscopy by visualizing detailed structures instead of shapeless blobs. Scientists claim that the limited physical knowledge confines the resolution bt they will obtain better visualizations of biological structures in the coming year.

Read This Before Having A Banana Milkshake!

When you type ‘milk banana’ in the Google search bar, you will probably get millions of recipes of banana milkshakes. Banana milkshakes are made of many healthy ingredients with essential nutrients. Blending with skim milk, it becomes a great snack with low calories. More importantly, it tastes so good, especially in a hot summer. Although banana milkshakes seem quite healthy and beneficial to human body, yet they may cause illness. Yes, you read that right. Mixing banana and milk together may harm our health.

Credit: Shelly Antol

For years, whether the combination of banana and milk benefits human body or not has been in debate. Both banana and milk help strengthen our body, such as gaining weight.  However, combining two kinds of health food may have the opposite effect. According to Harish Kumar, an expert Dietitian and Psychologist from Care For Life, banana milkshakes actually can hinder the digestion process and disturb sleeping patterns.

Ayurveda claims that every single food has its own taste, post digestive effect and a heating or cooling energy. And how well food is digested mainly depends on agni or gastric fire. Banana and milk are on the top of the list of incompatible foods. Even though bananas taste sweet, they have a sour post digestive effect while milk has a sweet one, which confuses our digestive system and leads to some imbalances. In addition, different digestive effects create such a negative reaction in human body that may generate extra water, clog body channel or even contribute to heart diseases.

More and more researches indicate that banana and milk do not go well together. If you really want to consume both of them, try to consume them separately rather than having a banana milkshake. Bananas and milk both have their own properties to strengthen our body but mixing together may cause ailments instead.

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Why are dogs so friendly?

People started raising dogs about 14,000 years ago. Dogs are believed to be the very first domesticated animals. I have a dog as well, a 4-year-old German Shepherd called BeiBei. BeiBei came to my home when he was only three months old. At first, he was naughty and a little bit ‘aggressive’ (because nobody had ever told him not to bite and biting was his particular way to play with others), but finally he became a clever, loyal and friendly grown-up.

A photo of BEIBEI and me. (credit to baojing Jin, My mum)

For centuries, dogs are considered as the best friends of humans. When it comes to dogs, ‘friendly’ must be the first word popping up in most people’s heads. However, wolves, another species from canis, were first cultivated by humans due to some evolutionary advantage but nobody succeeded at all. And even baby wolves were not likely to be docile.

So have you ever thought about why, exactly, dogs are much more friendly than wolves or other kinds of animals? The answer remained unknown until 2010, when a study on DNA of dogs and wolves was published by Bridgett, a geneticist from vonHoldt of Princeton University, and colleagues.

The core difference was discovered in a gene related to social behaviours called WBSCR17, which claimed that the gene difference makes dogs so friendly and influences dogs’ domestication. Gene difference is also the reason why dogs can be trained to sit or shake hands using food rewards while you might be dead right away if you are trying to do the same things to wolves.

He sat down in order to get the frisbee from my hand. (credits to myself)

So a new project comparing the DNA of domestic dogs and wolves raised by humans was carried out then. In the experiment, dogs seemed to pay more attention on humans than wolves. Analyzing the DNAs of them, genes called GTF2I and GTF2IRD1, other than WBSCR17, are different. In addition, these genes are also related to the social behaviours in humans. What’s more, WBSCR17 genes help dogs adapt themselves to live with humans. Similar, other domestic animals, namely cats and mice, have genes of the same functions enabling them to be tamer than wild animals.

So now you can answer the question: Why are dogs so friendly? The reason is just a handful of changes in special genes, GTF2I and GTF2IRD1 and WBSCR17. From the perspective of genetics, dogs are indeed good friends of humans.

-Xinyue Chen