Author Archives: jookyung yoon

First Quantum Code Written – Implications for the Future?

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Source: Flickr Commons, Charles Opper

November 17, 2015 – about 6 hours before the writing of this post – may be an important day for future generations to remember. Just 6 hours ago, University of New South Wales in Australia has released a press release that the first lines of quantum code has been written. What is quantum computing and why should anyone care?

It’s a very different concept from modern computing – which uses the typical binary system consisting 0’s and 1’s to represent data in a single unit called a bit. Quantum computing opens up many more possibilities than just 0’s and 1’s in a single unit. It can hold double the amount of states where 0-1 and 1-0 can also exist at the same time in a single unit.

Basically, the different between normal computing and quantum computing is similar to trying to send an SOS message using morse code versus texting. Using morse code, you’d have to write nine units of information to get the message across: … — … in such fashion. Using text, you would only have to type “SOS”, 3 units of information to call for help.

This means that once this technology is better understood and as more complex code for this system can be written and computed, it will be possible to store information in exponentially smaller files and compute faster. Check out the video below about quantum computing by user Veritasium on Youtube if you want to find out more about it.

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Researchers at the Google funded artificial intelligence lab at NASA believe that quantum computing could be the key to having enough processing power and efficiency, along with data efficiency to achieve artificial intelligence. I am not so sure if that is something that I would want in my life time. Call me paranoid but it would seem wise to assume that an intelligent entity would learn to put its own needs before any other being’s.

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Source: Flickr commons, Magdalena Ladrón de Guevara

Having said that, I think the benefits of quantum computing and coding, once masterd by engineers and scientists, will be a leap forward in technology. With the potential of exponentially faster processing power, we could expect next-generation iPads to outperform today’s supercomputers. Think of the possibilities!

By Justin Yoon

The Promising Near Future of Blood Transfusions

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Rendering of red blood cells. Source: Flickr Creative Commons – Nocturnal lust

Have you ever donated blood? Canadian Blood Services is always looking for more blood, because they need lots of it. For example, here’s a table of the required donations per single procedure.

Required amount of blood donors per case. Source: Canadian Blood Services – Who does my donation help?

As you can see, a single car crash can require blood from up to 50 donors. Such events can cause a shortage of blood. In fact, just last year, Canadian Blood Services issued an appeal for more blood donations, as blood supplies hit an all-time low, especially for type O universal donors.

What are universal donors? Donors of blood type O can donate to every other blood type, because they have no antigens (molecules that can cause severe and harmful responses by immune system on the recipient of the transfusion). The video below explains the concept of blood types and why some people can flexibly donate to all others blood types. Credit for this video goes to user nafis A on Youtube.

The problem with blood donations is that we can’t simply take many donations and stop worrying about blood reserves. This is because, just like milk, blood is perishable. Blood Centers Organization states that red blood can only be stored for 42 days before going bad. This creates a need for a continuous supply of blood donations to account for any emergencies.

On the bright side, the future of blood supplies look promising due to a recent publication by a research group at the University of British Columbia (UBC) at the Centre for Blood Research. They discovered a method to genetically enhance an enzyme which removes the antigens from blood. To do this, they used a genetic manipulation method called directed evolution.

David Withers’ Research Group at the Centre for Blood Research. Source: UBC Centre for High-Throughput Biology

This process introduces step-wise mutations in the DNA that encodes the enzyme. They use a multi-pronged approach by introducing many random mutations to the gene, and select the best performing mutants and do this for multiple rounds. The researchers at UBC claim that after five rounds of directed evolution, the enzyme which removes antigens from red blood cells is 170 times faster than the original enzyme. The original enzyme, although functional, was never fast enough to be a feasible way of removing antigens from blood. This genetically enhanced enzyme, however, can be used practically in the medical setting.

This discovery could potentially eliminate the shortage of antigen-specific blood by converting all donated blood to donor types! I think this has great potential for saving lives. From what I know about Biology, once the DNA of this hyper-enzyme has been sequenced, it can be easily generated from protein farms – where bacteria produce large quantities of the protein which can be purified and extracted for clinical use. I think it’s amazing to hear that my university is at the frontier of such impactful discoveries!

Blog by Justin Yoon

Commented on the following blogs:

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Bioethics dilemma by Paul Yi

Imposter syndrome by Luxi Xu

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Kidneys Grown in Petri Dishes Claimed to Be Functional When Transplanted in Animals

 

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Source: Flickr Commons. Credit to: Alpha

This past decade has been an exciting time for regenerative science. Developmental biologists have been striving to discover new methods to grow organs such as hearts, brains, muscles, and even a hamburger patty from stem cells. As of only this September, kidneys grown in Petri dishes have been shown to be functional in animal studies!

Japanese researcher Dr. Shinya Yokote and his team have come across a scientific breakthrough within the stem cell research field in their recent early edition paper published on September 21st, 2015.

The early edition paper claims that transplant of lab-grown kidneys from stem cells are fully functional – in the sense that they can generate and excrete urine – in their animal studies with rats and pigs. Other groups in the past have generated half functioning kidneys that could generate urine when transplanted into animals, but not excrete it – a disorder known as hydronephrosis.

Dr. Yokote’s group managed to overcome hydronephrosis by inventing a new system within the rat’s body for the stem cell-generated kidneys to excrete their waste in to prevent hydronephrosis. They biologically engineered a persistent drainage tube to the kidney and connected it to a temporary bladder which was transplanted along with the kidney. This new system would empty its waste to the animal’s real bladder when it became full. The scientists named this system the “stepwise peristaltic ureter,” (SWPU) and believe that this could be the future of kidney transplantation.

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A picture of the SWPU system that were used to transplant into rats. Source: Yokote, S., Matsunari, H., Iwai, S., Yamanaka, S., Uchikura, A., Fujimoto, E., Matsumoto, K., Nagashima, H., Kobayashi, E., Yokoo, T. (2015). Urine excretion strategy for stem cell-generated embryonic kidneys. PNAS Early Edition September 21, 2015. doi: 10.1073/pnas.1507803112

Although this discovery could impact millions with kidney failures in the future, readers should be warned that this is only an early access article. The researchers have not shown any empirical data to support their claims in their early access article. Those interested should keep a keen eye open for the full paper to be released!

By Justin Yoon