Category Archives: Science in the News

Exploding Arctic Seal Populations: Is Climate Change to Blame?

Melting ice. Rising sea levels. Intense weather patterns. We know it all too well. Now, what if I told you that certain types of seals in the Arctic are increasing in numbers despite all the other negative predictions associated with climate change?

Harbour seal by Steinkobbe

Katie Florko, a Ph.D. student at the University of British Columbia, observed increasing population changes of Harbour seals in the Churchill River Estuary for the last two decades. Florko’s research team believes that this increase is associated with melting ice sheets due to the recent atmospheric warming, consequently exposing the ground and water beneath. Harbour seals, unlike their Arctic neighbours such as Ringed seals, prefer laying on exposed rocks, sand, and mud banks instead of ice. The following video goes into the specifics:

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The Big Picture

       Anyone with background knowledge on ecology might question the effect of this increase on the stability and diversity of Arctic ecosystems. The answer is complicated. All plants and animals, including us, in an ecosystem are interconnected making it difficult to tell which way the populations will shift in fast-changing environments. However, the outcomes of climate change are generally negative. With alarming rates of melting ice, the Arctic region is where change is most evident. It is brought on by the continuous release of greenhouse gases into our atmosphere from increasing population energy demands, use of transportation fuel, and unsustainable resources. As a result of their warming habitats, Arctic species are forced to shift northwards, chasing their ideal conditions.

Melting Ice Cover in the Arctic by Jeremy Potter/NOAA

Drive for Deeper Understanding

     “The Arctic is one of the areas that is undergoing one of the most rapid changes related to climate change”, said Florko. Studying the Arctic and other regions of the world can provide a deeper understanding of the consequences of climate change on global ecosystems. People are also affected as melting ice brings on sea level rise, endangering coastal infrastructure world-wide

As crucial as Arctic research is, the investigation into the effects of climate change is not easy. Arctic research, specifically, requires extensive commitments, funding, and equipment. Only those brave enough to face the extremely cold conditions of the Arctic icefields go up to study its wonders. Nonetheless, modern-day technology has made it easier for scientists to travel north. The podcast below goes into more detail about the various aspects of Arctic field studies.

While Florko’s study solved a small puzzle piece of the effects of climate change in the Arctic, there is still substantial amounts of research needed to be done.

As for the non-scientists, it’s good to keep in mind that drastic changes are happening in places where most people might not see but that does not make them any less of a concern.

 

Written by: Ellena Yoon, Jocelyn Cheng, Polina Orlov, Brian Agafitei

A New Organic Compound has Potential in Removing Nuclear Uranium Wastes

          On September 20, 2018, Mohammad Chaudhry, a Ph. D student at the University of British Columbia and his team of researchers have produced a new chemical compound known as an expanded campestarene. This new compound is a large, cyclic molecular structure that possesses the unique property of binding strongly to uranium ions. This can have real-world applications in the future as a tool to manage nuclear waste since the uranium by-product produced by nuclear reactors is a growing concern. Expanded campestarenes’ ability to strongly bind to uranium ions can be used to specifically remove dangerous, radioactive uranium waste.

The hollow cavity of expanded campestarene in the middle will hold the uranium ion.

The Campastarene Creation:

          The process for making such a compound is not an easy process. It requires a lot of trial and error, and an extensive knowledge of macrocycle chemistry, a subsection of chemistry. Despite being an expert on this subject, it still took Chaudhry a lengthy time to obtain enough of these molecules to call it a success. According to Chaudhry, “I basically went through the periodic table, and I went through a list of which elements would make sense to work in this type of reaction, and uranium was one I thought would work.” Overall, this process took about eight months.

          After selection of uranium ion, a reflux reaction was used to produce the compounds. A reflux reaction is simply heating a bunch of chemical compounds in order to input energy and make the reaction more likely to happen. “Basically, you mix it and you heat it and then you purify it, and that’s it,” says Mohammad.

          The following video contains the journey that Chaudhry and his colleagues have taken to create this molecule.

SO Project Group 5 Video” by Group 5 is licensed under YouTube.

The Uranium Situation and the Campastarene Solution

          The expanded campestarenes produced by Chaudhry’s team are very unique molecular compounds. The most notable property is its ability to bind strongly to uranium ions. The expanded campestarenes have an internal cavity that can specifically bind to uranium ions, forming a very stable complex. As a result, it is a useful uranium sequestering agent. Uranium sequestration describes the process of removing uranium ions from solution by strongly binding to it.

          This property can be extremely useful when it comes to managing uranium waste produced by nuclear reactors. With our increasing need for nuclear energy, more uranium waste is being produced. There are two types of uranium waste produced from these power plants: non-radioactive and radioactive uranium.  Radioactive uranium is dangerous to humans and the environment. It can damage one’s DNA, cells, tissues, and organs, and can also contaminate groundwater and soil, drastically impacting the environment. In addition, uranium waste is very difficult to get rid of because it takes hundreds-of-thousands of years to decompose naturally

          However, removing radioactive uranium is not as easy as it may seem. It is hard to differentiate the safe, non-radioactive uranium from the harmful, radioactive uranium. Therefore, by creating an expanded campestarene that can specifically bind to dangerous, radioactive uranium, it can be safely removed. This binding process is called chelation, where a molecule with specific structure allows it to target specific metal ions (like uranium).

         The following podcast by SCIE 300 Group talks about the daily-used chelating agents, such as chelating food additives and chelating agents in water purification. Also, the podcast contains an interview with Mohammad Chaudhry about the practical implication of expanded campestarene.

SCIE 300 SO Project Podcast” by Group 5 is licensed under YouTube

          Although uranium sequestration has practical applications, especially when it comes to nuclear waste, modifications to Chaudhry’s expanded campestarenes still need to be made before it can be used for practical use. “This experiment was mostly an academic curiosity,” Chaudhry says. However, Chaudhry’s discovery has set the foundation for future research on the topic of expanded campestarenes. Perhaps in the future, the specific binding nature of expanded campestarenes can be put to applicable use, especially in dealing with the radioactive uranium waste problem.

A New Frontier to Our Red Neighbor

Being one of Earth’s closest neighbors and named after a Roman God of War, Mars is the 4th planet of the solar system. It has been an object of wonder for centuries due to being visible to the naked eye. Because of this, Mars has always been a popular choice for our new home. This has been considered more seriously in the recent years due to the rapid increase of human population and the depletion of resources on Earth.

Surface of Mars and its polar ice cap. Source Nasa

Mars One

Mars One is an organization founded in 2011 whose goal is to establish a permanent human settlement on Mars. With many PhD researchers and large suppliers like Lockheed Martin on board, Mars One planned multiple manned and unmanned missions over the span on 20 years. They plan to start Astronaut training by 2018 for prolonged stay in remote locations, repairing rovers, medical treatment, and food growth. Aiming to launch the first crew in 2031 via the Mars Transit Vehicle, many unmanned missions will be launched before that to experiment with crucial tasks such as water extraction and solar panels, satellite deployment, and setting up an outpost. After the landing, astronauts will set up solar panels and prepare for a second group of astronauts launching in 2033. Mars One has addressed potential risks of this project such as the lives of astronauts and the potential of over budget, however they plan on reducing cost by using existing technologies.

Mars One’s concept of Martian base. Source Mars One

Ecole Polytechnique Federale de Lausanne (EPFL)

Another plan was drafted recently by a group of scientists and researchers in EPFL, a Switzerland University. The plan was accepted on June of 2018 to set up Martian bases on the polar ice cap regions of Mars. The poles prove to be ideal places to set up a base because it provides a source of water and various elements to create materials. Like the Mars One, EPFL plan to send multiple unmanned missions to construct a habitable base. The design of the base consists of a central core which will act as a living quarter for the astronauts, 3 surrounding capsules will have airlock functionality to minimize pressure change, and a large dome to protect the area within from radiation and the harsh dust storms of the Martian surface. They plan on sending a crew of 6 astronauts to land during the polar summer to maximize sunlight during their stay. The astronauts are planned to stay for 9 months to set up power reactors and a second mission will be initiated to bring cranes for material transportation. A potential issue with this plan is that there is currently no rocket strong enough to carry the planned heavy load.

Floor plan of the proposed base. Source EPFL

 

The Future of Mars Colonization

As human population increase, so does the rate of consumption and the need for us to find a new home becomes increasingly real. With the many advantages that Mars provide and garnering the interest of groups like Mars One and the scientists of EPFL, the Red Planet is a likely option for us to call home in the near future.

– Jerry Chen

 

Discovery of New Microbe Redraws Tree of Life

Imagine going on a walk in the woods and stumbling on a new microbe so different from all other life on earth that it would baffle taxonomists. That’s what happened to Yana Eglit, a graduate student at Dalhousie University, Nova Scotia.

Eglit collected some seemingly ordinary dirt on her hike and discovered a microbe that could redefine all that we know about evolution of life! It’s a newly discovered species that fits under the Hemimastigotes, first documented in the 19th century. Ever since then, this group of organisms did not have a spot on the tree of life but now, with the newly found species, that can change.

The Hairy Ogre

The new microbe was named after a mythological hairy ogre, Hemimastix kukwesjijk, and it sure looks like one! Made up of only a single cell, its body is only about two-hundredth of a millimeter, making it too small to see with the naked eye. Below is an image of it taken with an electron microscope. On the right is its mouth and all around the sides it has multiple tentacle-like projections, called flagella.

It feeds by reaching and capturing its prey (other microbes) with its flagella, bringing it to its mouth and sucking the insides out. That sure sounds like a creation from an alien movie!

Though possible benefits of this new species has yet to be studied, microbes are used in food, medicine, and water treatment so the Hemimastix could prove to be useful to us too.

Retracing the Tree of Life

Almost immediately after the discovery, scientists analyzed the microbe’s genetic makeup and found it to be so unique that it can form its own “supra-kingdom”. Animals and fungi fit into the same supra-kingdom, meaning that people and mushrooms are more similar to each other than they are to this organism.

The Hemimastix has a complex cell structure making it a eukaryote, just like humans! However, they don’t quite fit into any of the existing Eukaryotic domains. “This discovery literally redraws our branch of the ‘Tree of Life’ at one of its deepest points” said Alastair Simpson, professor and lead author of the study.

Further studies on this microbe can shed light on the evolutionary history of all life on earth. Looking at organisms present here today, especially simple microbes like this, can aid in understanding how life was shaped over billions of year. And this is just one piece of a puzzle!

Diversity of Life by Highland Lakes School

“That such a distinct form of life could be hiding literally under our feet is a sharp reminder about how little we still know about the diversity of life on Earth.” says Dr. Simpson.

So next time you’re feeling lonely, just think about all the life that surrounds you, microbes and other. A lot of it yet to be discovered!

-Polina Orlov

Vitamin D: A New Puzzle Piece to the Clockwork of Life

Imagine being to able to freeze a cell in one moment in time and then bringing it back to life in the future. This sounds like something straight out of a science fiction novel but it is exactly what some species of fish are already doing.

The researchers at Portland State University discovered that vitamin D is not only essential for calcium regulation, but also plays a major role in prompting and arresting embryonic development in killifish, Austrofundulus limnaeus ( A.limnaeus). Their findings reveal that early development of vertebrates depend on vitamin D for the mechanism connecting environmental signals to developmental pathways.

A.limnaeus

The habitat of A.limnaeus is often seasonal ponds that form from rainfall then disappear by evaporation. The uncertainty in their environment resulted in shaping two trajectories in their embryonic development. In one trajectory, embryos reach maturity while in the other, embryos enter dormancy. Dormancy is a period in the life cycle of an organism where growth is suspended to minimize metabolic activity in hopes to conserve energy under unfavourable conditions in the environment. A.limnaeus embryos goes dormant in mud when there are limited resources of nutrients and water. 

Austrofundulus limnaeus by A. C. Terceira

The Research

To investigate what mechanisms were involved in regulating embryonic activity, the researchers placed the embryos of A. limnaeus under different temperatures to observe the two developmental pathways: active and diapause (dormant). They searched for the gene in the RNA of the embryos that would trigger the active development when expressed. The results showed that vitamin D synthesis and signalling promoted active development in environments favouring dormancy while blocking vitamin D synthesis drove embryos into diapause in environments favouring active development.

They also discovered dormancy in zebrafish by inhibiting vitamin D synthesis. This finding is significant in that it suggests the role of vitamin in the early development pathways not only in A. limnaeus but to vertebrate species as a whole as zebrafish are not known to naturally follow the dormancy trajectory.

The Life Cycle of A. limnaeus (Dormant phases shown in dry seasons) by K. Culpepper

This discovery of vitamin D and its role is significant to today’s medical science as it opens doors to understanding how dormancy in human cells are controlled. By exploring the systems that regulate such phenomenon at a molecular level, we can progress to understand and find cure to medical conditions such as cold shock and even heart attacks.

Ellena Yoon

Erasing Bad Memories

Our brain stores both good and bad memories. They don’t stay still and can fade away as time lapses. But every time when you happen to recall those bad moments in your brain, you might be overwhelmed with the come back of those “nightmares” and hope to wipe them out from your mind forever. In worse cases, this can even cause a mental illness that 1 in 5 Canadian adults will personally experience in their lifetime.

A recent study suggests that by applying an electrical shock to the brain shortly after recalling a troubling event will help a person forget many of those upsetting details. Particularly for people with severe anxiety, post-traumatic stress disorder or depression, findings from the study can inspire the creation of more effective treating methods to help these people ease their mental burden, with the side effects on memory minimized. 

Erasure of negative memories one step closer to reality by Neale McDevitt; Image Source.

More Controllable Electroconvulsive Therapy(ECT)

Electroconvulsive therapy(ECT), an effective but commonly-held risky treating method was applied to 42 depression patients in the study, where their brains were jolted with a powerful electrical current under anesthesia. First, participants watched a series of pictures as they heard a narrator describe two upsetting stories. The first one was a car hitting a young boy and severing both of his feet, and the other was a woman being attacked in an alley. One week after they first heard the stories, they were asked to recall and describe the details of one of them. Immediately after recalling the story, the patients were anesthetized and treated with ECT. A day after that, participants were asked to take multiple-choice tests about the story.

The results have shown that participants performed no better than chance at remembering the details of the story that had been recalled just before ECT. But they were better at remembering the other story that hadn’t been recalled just before ECT.

“Scientists and patients know that ECT is bad for memory in general, but the results showed that the therapy, when carefully timed, can knock down specific memories”, says the study co-author Marijn Kroes of Radboud University Nijmegen in the Netherlands.

‘Shock Therapy’ Could Erase Disturbing Memories by DNEWS; Image Source

“Elegant” Results

However, given the positive results for erasing specific bad memories, the study was queried and deemed as “elegant” by Daniela Schiller, a neuroscientist at Mount Sinai School of Medicine in New York. One disturbing factor is the uncertainty concerning whether ECT could interfere with natural memories, created in a person’s daily life and not in a lab.

Overall, ECT at this stage is still not applicable to simple memory erasing, and more clinical testing is required for wider applications. But for patients undergoing treatment for depression or other severe mental problems, ECT can allow them to gain control over crippling memories. This is to say, a person can better protect their good memories by not thinking about them prior to the treatment, yet try to recall those unpleasant ones with the hope that they would be weakened selectively. 

Leqi(Nancy) Wan

Peanut Allergies May Be a Thing of the Past

Currently, roughly 2% of Canadian children are allergic to peanuts. Symptoms of children who are allergic to peanuts can range from redness and irritation of the skin to swelling and shortness of breath, which in extreme cases can lead to life-threatening circumstances requiring immediate medical attention.

Carter Grodi is one of the many children allergic to peanuts who has had to bring his own cupcake to birthday parties, had to learn to read food labels and turned 15 without once tasting a Kit Kat or Twix.

Figure 1. A few of the many products containing peanuts. Used with permission, © 2018 The New York Times

However, at the age of 16, Carter was able to taste the wonders of Kit Kat’s and Twix’s without having an allergic reaction. Carter had recently completed a yearlong clinical trial of oral immunotherapy where he was gradually exposed to increasing amounts of peanuts in hopes of reducing his sensitivity to peanuts.

This new drug, named AR101, was created by Aimmune Therapeutics. The active ingredient in AR101 is surprisingly peanut flour. The peanut flour is carefully measured and packaged into capsules which can be opened so that the peanut flour can be added into foods and consumed. Dr. Vickery, lead scientist of the study, said, “This trial has generated the highest quality evidence to date about whether oral immunotherapy works and how safe it is.”

The treatment itself can cause allergic reactions among participants. However, participants who complete the clinical trial are better able to handle an accidental exposure to peanuts. “You exchange that uncertain, unpredictable risk of having an accidental reaction that spirals out of control for these . . . mostly mild or moderate symptoms, that are manageable for most patients,” Dr. Vickery said.

The goal of this treatment is not to cure the allergy but instead to lower the risk that an accidental exposure to peanuts will cause a life-threatening reaction. Thus, allowing children with peanut allergies and their families to live without fear and anxiety of an accidental encounter with peanuts which could potentially lead to harm, or in worse cases, death.

This treatment has been life changing for Carter, who continues to eat small amounts of peanuts to maintain his low-level tolerance. He said, “I can go sit in a place another kid was the day before and not have to wipe off the desk, and not worry about what my friends are eating around me.” He then mentioned, “To me, a peanut was like a weapon, like you have a gun to your head and you could have the trigger pulled any time. There’s not really that gun anymore.”

Figure 2. Carter Grodi at home in Florida with his mother, Carolee. Used with permission, © 2018 The New York Times

AR101 has been named a breakthrough therapy. Plans are in motion for this drug to undergo priority review and to go through a quickened approval process. “It could be on the market by the end of 2019,” a spokeswoman said.

Trevor Shen

Does the Ketogenic Diet Really Work?

People nowadays are obsessed with the idea of being healthy; after all, who doesn’t want to feel good and look good at the same time? Besides exercising regularly and sticking to a proper sleeping schedule, the most important way to achieve this is to eat a balanced diet. However, there is no ultimate diet that works for everyone; a diet that may keep one person energized throughout the day while allowing them to look fit and strong might make someone else overweight or sick. Many diets gain and lose popularity throughout the years, but there is one diet that stands out, especially for athletes and people looking to lose weight: the ketogenic diet.

Guacamole recipe easy to make in serving dish

Guacamole is a dip made from avocados, which is a great source of healthy fats
(photo credit: Elise Bauer at simplyrecipes.com)

Carbohydrates are one of the three macronutrients in the food we eat and it is broken down into glucose and used as the body’s primary source of energy. However, in the keto diet, little or no carbs are consumed in order to force the body into ketosis (a metabolic state where the body starts to burn fat instead of carbs as a primary fuel source). Since carbs hold onto water and no carbs are being consumed, a person who starts keto will lose weight, most of which comes from the loss of water. It can also promote further weight loss because of intermittent fasting (eating only during a certain number of hours each day; during the fasting period, the body has no food calories to make energy and is forced to use fat reserves instead).

Interestingly, the ketogenic diet can also help children with epilepsy. As mentioned before, due to the lack of carbohydrates, the body is in ketosis because the liver converts fat into ketone bodies. In a study, researchers found that since there are more ketone bodies in the bloodstream, as well as a reduction in blood sugar, the chances of a seizure are greatly lowered.

However, there are some side effects and risks associated with the ketogenic diet. Not eating enough carbohydrates can cause hunger, which in turn causes headaches and fatigue. There may also be vitamin and mineral deficiencies as well as dehydration and constipation. In addition, children who use the keto diet for long periods of time may experience slow or stunted growth because they are not getting proper nutrition.

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Video of a Keto Breakfast Rollup Recipe
(credit: RuledMe on Youtube)

Lawrence Liang

Some People Say It’s Easy to Quit

 

Image Credit:
https://thedoctorweighsin.com/opioid-addiction-cancer-of-our-generation/

You’ve probably heard the news, or seen posts  online about the opioid crisis affecting Canada.  British Columbia (B.C.) is the hardest hit province with the death rate of 1, 399 people in 2017 according to CBC news, which is 974 more people than 2016, who have died because of the opioid crisis. If this nasty phenomenon is happening and almost all of the public is aware about it, including drug users, then what causes them to continue to put their life at risk and inject, snort, and ingest the drug into their body knowing the possibility they may die in the upcoming couple of hours?

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According to the U.S. National Library of Medicine, opioid addiction is a chronic long-lasting condition that is characterized by a powerful and compulsive urge to use an opioid drug. Without the use of the drug the abuser will feel muscle pain, anxiety, diarrhea, and cramping. These symptoms are so extreme that they will force the user to obtain the drug because without it, life will be miserable. Therefore, the abuser has no option but to ingest the drug in order to feel “normal”.

Image result for cartoon diagram of opioid receptors

Image Credit: https://www.yahoo.com/news/this-is-your-brain-on-opioids-194212388.html

Thomas R. Kosten and Tony P. George explain that 0pioids travel in the bloodstream and as soon as they enter the body they attach to little proteins in the blood called mu. We can imagine mu to be small magnets floating in our blood; once the drug attaches to mu it becomes activated triggering our brain to produce feelings of pleasure. Most often we get these same feelings of pleasure through normal day-to-day activities such as eating and sex. There is a portion of our brain that remembers the pleasurable feelings and associates them with the circumstances and the environment that we experienced them. These memories are called conditioned associations, when we experience the same conditions such as re-encountering the same people, places, or things we want the drug to make up the missing puzzle piece.

Opioid withdrawal occurs because gradually overtime opioid receptors such as mu stop responding to smaller concentrations of natural hormones. There is an area of the brain called locus ceruleus (LC). The LC controls the normal day-to-day functions such as breathing, blood pressure, and wakefulness. When the opioid drug attaches to mu, it causes the LC to stop working, which results in low blood pressure, drowsiness, and slowed respiration. However, the LC is smart! It responds by increasing its power and returning the person to a normal state by fixing all the factors mentioned above. Therefore, when opioids are present the person feels normal however when opioids are not present, the LC is still working at its strongest power and the opioid-mu complex is not available to counteract it. This causes jitters, anxiety, muscle cramps, and diarrhea – which are the symptoms of withdrawal.

Therefore opioid addiction is understood as a medical disorder, similar to heart disease, diabetes, or mental illnesses. Next time you read about the opioid crisis in B.C. never assume that people can easily stop taking their drug. They need medical help in order to stop, and until the individuals suffering don’t get the help they need they will be living in danger.

Jasleen Jassal

 

 

 

 

Last resort: It’s better to be overweight!

Being obese is a serious health risk especially because obesity is a risk factor which causes cancer. This is because the excess fat cells secrete extra hormones and growth factors that stimulate cells to multiply. Which then, there is an increased chance of cancer cell also reproducing in vast numbers.

How does being overweight cause cancer?
https://www.cancerresearchuk.org/about-cancer/causes-of-cancer/obesity-weight-and-cancer/does-obesity-cause-cancer

The fact that obesity is a major risk factor for malignancies has been proven many times, but the relationship between obesity and the immune response is not very well understood. Ironically, a recently published scientific study has shown that obese patients had a greater survival outcome to targeted therapy to treat Metastatic Melanoma. This suggests that obesity has some kind of factor that helps these patients respond better to treatments.

Metastatic Melanoma is an advanced skin cancer where the cancer cells spread to other parts of the body, such as the lungs, liver and brain. Patients at this stage of cancer are treated with targeted therapy, checkpoint inhibitor immunotherapies and chemotherapy. Dr. McQuade and her colleagues followed 2046 patients with metastatic melanoma that were actively receiving one or more of these treatments from Aug. 8, 2006, to Jan. 15, 2016. Each patient was classified as normal, overweight or obese according to the body-mass index (BMI). The results show that compared to patients with normal BMI, obese patients had improved overall survival. Obese patients lived about 27 months with advanced melanoma cancer while normal BMI patients lived to only about to 17 months, near doubling in survival.

PD-1 protein inhibiting T-cells & Immune Response
https://www.arigobio.com/news/new-spd-1-elisa-kit

It is suspected that the treatment works very well for obese patients because of the amplified results from the treatment. Advanced Melanoma treatment works by blocking activation of a protein, PD-1. Tumours stimulate the release of these proteins because they reduce the amount of immune response towards cancerous cells. In obese patients, there are greater amounts of PD-1 than in normal BMI patients and also a greater amount of leptin, a hormone created by fat cells which trigger a pathway that increases PD-1. So as soon as the treatment is in effect, the PD-1 is removed and the immune response is increased. With abundant nutrient available in obese patients, the immune response works better to attach the cancer cells.

Unfortunately, this study also showed these results were only applicable to men and there was no association between obesity and survival rates in women. Also, treating metastatic melanoma patients with a high-fat diet to mimic the effects of obesity can cause harm to patients so further research is needed before clinically used.